Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 KBTBD2-206ENST00000477129 695 ntTSL 29.45□□□□□ -0.96e-6■□□□□ 8.8
SMNDC1O75940 MARK3-211ENST00000556744 1051 ntTSL 1 (best)9.36□□□□□ -0.916e-6■□□□□ 8.8
SMNDC1O75940 FIGNL1-210ENST00000448788 572 ntTSL 49.33□□□□□ -0.926e-6■□□□□ 8.8
SMNDC1O75940 MARK3-210ENST00000556463 3584 ntTSL 1 (best)9.23□□□□□ -0.936e-6■□□□□ 8.8
SMNDC1O75940 THOC2-203ENST00000416618 657 ntTSL 59.09□□□□□ -0.952e-9■□□□□ 8.8
SMNDC1O75940 FIGNL1-206ENST00000433017 3626 ntAPPRIS P1 TSL 2 BASIC8.79□□□□□ -16e-6■□□□□ 8.8
SMNDC1O75940 FIGNL1-209ENST00000440350 617 ntTSL 38.71□□□□□ -1.026e-6■□□□□ 8.8
SMNDC1O75940 THOC2-209ENST00000448128 1365 ntTSL 58.7□□□□□ -1.022e-9■□□□□ 8.8
SMNDC1O75940 MARK3-208ENST00000554627 1571 ntTSL 28.51□□□□□ -1.056e-6■□□□□ 8.8
SMNDC1O75940 MARK3-218ENST00000559274 1053 ntTSL 28.39□□□□□ -1.076e-6■□□□□ 8.8
SMNDC1O75940 FIGNL1-211ENST00000611938 3543 ntAPPRIS P1 TSL 5 BASIC8.26□□□□□ -1.096e-6■□□□□ 8.8
SMNDC1O75940 TSC1-201ENST00000298552 8604 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.116e-6■□□□□ 8.8
SMNDC1O75940 FIGNL1-214ENST00000617389 3259 ntAPPRIS P1 TSL 4 BASIC8.11□□□□□ -1.116e-6■□□□□ 8.8
SMNDC1O75940 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC8.05□□□□□ -1.126e-6■□□□□ 8.8
SMNDC1O75940 MARK3-203ENST00000335102 2331 ntTSL 5 BASIC7.92□□□□□ -1.146e-6■□□□□ 8.8
SMNDC1O75940 TSC1-203ENST00000440111 8463 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.156e-6■□□□□ 8.8
SMNDC1O75940 THOC2-213ENST00000464604 664 ntTSL 27.84□□□□□ -1.152e-9■□□□□ 8.8
SMNDC1O75940 HNRNPAB-203ENST00000504796 578 ntTSL 27.79□□□□□ -1.166e-6■□□□□ 8.8
SMNDC1O75940 MARK3-215ENST00000558787 758 ntTSL 27.22□□□□□ -1.256e-6■□□□□ 8.8
SMNDC1O75940 THOC2-205ENST00000432353 3188 ntTSL 1 (best)6.9□□□□□ -1.32e-9■□□□□ 8.8
SMNDC1O75940 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC6.88□□□□□ -1.312e-9■□□□□ 8.8
SMNDC1O75940 FIGNL1-213ENST00000615084 3368 ntAPPRIS P1 TSL 3 BASIC6.57□□□□□ -1.366e-6■□□□□ 8.8
SMNDC1O75940 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.652e-9■□□□□ 8.8
SMNDC1O75940 THOC2-208ENST00000441692 4364 ntTSL 54.26□□□□□ -1.732e-9■□□□□ 8.8
SMNDC1O75940 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.776e-6■□□□□ 8.8
SMNDC1O75940 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.5□□□□□ -1.856e-6■□□□□ 8.8
SMNDC1O75940 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.856e-6■□□□□ 8.8
SMNDC1O75940 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.96e-6■□□□□ 8.8
SMNDC1O75940 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.98□□□□□ -1.932e-9■□□□□ 8.8
SMNDC1O75940 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.36□□□□□ -2.032e-9■□□□□ 8.8
SMNDC1O75940 GET4-205ENST00000441491 682 ntTSL 513.75□□□□□ -0.214e-7■□□□□ 8.8
SMNDC1O75940 MARCH7-205ENST00000421037 559 ntTSL 412.99□□□□□ -0.334e-7■□□□□ 8.8
SMNDC1O75940 EME1-209ENST00000513077 562 ntTSL 412.87□□□□□ -0.354e-7■□□□□ 8.8
SMNDC1O75940 MARCH7-209ENST00000539065 3303 ntTSL 2 BASIC12.1□□□□□ -0.474e-7■□□□□ 8.8
SMNDC1O75940 MARCH7-207ENST00000473749 821 ntTSL 39.54□□□□□ -0.884e-7■□□□□ 8.8
SMNDC1O75940 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.444e-7■□□□□ 8.8
SMNDC1O75940 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.834e-7■□□□□ 8.8
SMNDC1O75940 HECTD1-212ENST00000556004 595 ntTSL 29.24□□□□□ -0.933e-7■□□□□ 8.8
SMNDC1O75940 HECTD1-217ENST00000557369 554 ntTSL 44.56□□□□□ -1.683e-7■□□□□ 8.8
SMNDC1O75940 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC5.97□□□□□ -1.451e-323■□□□□ 8.8
SMNDC1O75940 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.871e-10■□□□□ 8.8
SMNDC1O75940 SRSF4-206ENST00000605204 1399 ntTSL 1 (best)17.2■□□□□ 0.341e-10■□□□□ 8.8
SMNDC1O75940 SRSF4-202ENST00000466448 1264 ntAPPRIS ALT2 TSL 317.03■□□□□ 0.321e-10■□□□□ 8.8
SMNDC1O75940 SRSF4-208ENST00000634348 8128 ntTSL 511.8□□□□□ -0.521e-10■□□□□ 8.8
SMNDC1O75940 SNORD33-201ENST00000362761 85 ntBASIC1.91□□□□□ -2.11e-323■□□□□ 8.7
SMNDC1O75940 NARF-225ENST00000584445 2484 ntTSL 212.33□□□□□ -0.442e-6■□□□□ 8.7
SMNDC1O75940 NARF-227ENST00000584965 300 ntTSL 39.72□□□□□ -0.852e-6■□□□□ 8.7
SMNDC1O75940 NARF-226ENST00000584513 500 ntTSL 38.59□□□□□ -1.032e-6■□□□□ 8.7
SMNDC1O75940 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.512e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.53■□□□□ 0.882e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.532e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.71■□□□□ 0.432e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.28■□□□□ 0.362e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.93■□□□□ 0.32e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.05■□□□□ 0.162e-7■□□□□ 8.7
SMNDC1O75940 SREK1-212ENST00000522912 2047 ntTSL 1 (best)16.04■□□□□ 0.162e-7■□□□□ 8.7
SMNDC1O75940 TYK2-211ENST00000529412 711 ntTSL 315.53■□□□□ 0.082e-7■□□□□ 8.7
SMNDC1O75940 THOP1-210ENST00000590533 616 ntTSL 215.12■□□□□ 0.012e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-221ENST00000552383 1267 ntTSL 215.05■□□□□ -02e-7■□□□□ 8.7
SMNDC1O75940 RNF10-207ENST00000536869 644 ntTSL 514.71□□□□□ -0.052e-7■□□□□ 8.7
SMNDC1O75940 SREK1-209ENST00000520953 2172 ntTSL 514.13□□□□□ -0.152e-7■□□□□ 8.7
SMNDC1O75940 THOP1-212ENST00000591149 789 ntTSL 313.89□□□□□ -0.192e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC12.92□□□□□ -0.342e-7■□□□□ 8.7
SMNDC1O75940 RNF10-201ENST00000325954 3825 ntTSL 1 (best) BASIC12.89□□□□□ -0.352e-7■□□□□ 8.7
SMNDC1O75940 RNF10-203ENST00000413266 2671 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.352e-7■□□□□ 8.7
SMNDC1O75940 RNF10-212ENST00000538796 1206 ntTSL 512.56□□□□□ -0.42e-7■□□□□ 8.7
SMNDC1O75940 RNF10-216ENST00000542438 562 ntTSL 412.13□□□□□ -0.472e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-209ENST00000546979 554 ntTSL 311.95□□□□□ -0.52e-7■□□□□ 8.7
SMNDC1O75940 SREK1-202ENST00000334121 6781 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.552e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-203ENST00000345133 1088 ntTSL 3 BASIC9.85□□□□□ -0.832e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-211ENST00000548489 1536 ntTSL 3 BASIC8.99□□□□□ -0.972e-7■□□□□ 8.7
SMNDC1O75940 SREK1-215ENST00000524111 4074 ntTSL 58.71□□□□□ -1.022e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-223ENST00000618001 3030 ntTSL 2 BASIC8.58□□□□□ -1.042e-7■□□□□ 8.7
SMNDC1O75940 SREK1-213ENST00000523655 606 ntTSL 58.39□□□□□ -1.072e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-216ENST00000550958 706 ntTSL 38.2□□□□□ -1.12e-7■□□□□ 8.7
SMNDC1O75940 RNF10-205ENST00000535417 546 ntTSL 38□□□□□ -1.132e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC6.76□□□□□ -1.332e-7■□□□□ 8.7
SMNDC1O75940 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC6.61□□□□□ -1.352e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-213ENST00000549468 526 ntTSL 36.41□□□□□ -1.382e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC6.36□□□□□ -1.392e-7■□□□□ 8.7
SMNDC1O75940 RNF10-218ENST00000543578 548 ntTSL 46.32□□□□□ -1.42e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-215ENST00000549780 801 ntTSL 55.88□□□□□ -1.472e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-217ENST00000551333 564 ntTSL 35.13□□□□□ -1.592e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-214ENST00000549546 820 ntTSL 54.98□□□□□ -1.612e-7■□□□□ 8.7
SMNDC1O75940 SREK1-208ENST00000520580 2369 ntTSL 24.8□□□□□ -1.642e-7■□□□□ 8.7
SMNDC1O75940 SREK1-201ENST00000284041 3751 ntTSL 1 (best)4.67□□□□□ -1.662e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-212ENST00000549253 563 ntTSL 34.49□□□□□ -1.692e-7■□□□□ 8.7
SMNDC1O75940 SREK1-206ENST00000519259 9353 ntTSL 23.46□□□□□ -1.862e-7■□□□□ 8.7
SMNDC1O75940 SLC22A31-205ENST00000603735 791 ntTSL 315.43■□□□□ 0.061e-9■□□□□ 8.7
SMNDC1O75940 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.81■□□□□ 0.442e-10■□□□□ 8.7
SMNDC1O75940 FNIP1-205ENST00000615660 6589 ntTSL 5 BASIC13.48□□□□□ -0.252e-10■□□□□ 8.7
SMNDC1O75940 FNIP1-203ENST00000510461 3845 ntAPPRIS P4 TSL 1 (best) BASIC11.1□□□□□ -0.632e-10■□□□□ 8.7
SMNDC1O75940 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.392e-10■□□□□ 8.7
SMNDC1O75940 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC6.1□□□□□ -1.432e-10■□□□□ 8.7
SMNDC1O75940 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.52e-10■□□□□ 8.7
SMNDC1O75940 ATP5A1-205ENST00000586592 2214 ntTSL 223.83■■□□□ 1.417e-8■□□□□ 8.7
SMNDC1O75940 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC23.83■■□□□ 1.417e-8■□□□□ 8.7
SMNDC1O75940 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.197e-8■□□□□ 8.7
SMNDC1O75940 ATP5A1-208ENST00000589252 662 ntTSL 517.54■□□□□ 0.47e-8■□□□□ 8.7
SMNDC1O75940 ATP5A1-213ENST00000590406 756 ntTSL 317.54■□□□□ 0.47e-8■□□□□ 8.7
Retrieved 100 of 11,362 protein–RNA pairs in 216.4 ms