RNA–Protein interactions for RNA: ENST00000556463.5

MARK3-210, Transcript of microtubule affinity regulating kinase 3, humanhuman

TSL 1 (best)

Gene MARK3, Length 3,584 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MARK3-210ENST00000556463 NISCHQ9Y2I1 1504 aa16.84■□□□□ 0.29
MARK3-210ENST00000556463 CHIC1Q5VXU3 224 aa16.6■□□□□ 0.25
MARK3-210ENST00000556463 AEBP2Q6ZN18 517 aaPredicted RBP16.03■□□□□ 0.16
MARK3-210ENST00000556463 PHF23Q9BUL5 403 aaPredicted RBP15.03■□□□□ -0
MARK3-210ENST00000556463 EHMT2Q96KQ7 1210 aa14.75□□□□□ -0.05
MARK3-210ENST00000556463 SLC24A1O60721 1099 aa14.6□□□□□ -0.07
MARK3-210ENST00000556463 HRCP23327 699 aa14.37□□□□□ -0.11
MARK3-210ENST00000556463 ZCCHC6Q5VYS8 1495 aaKnown RBP14.36□□□□□ -0.11
MARK3-210ENST00000556463 PELP1Q8IZL8 1130 aaKnown RBP14.31□□□□□ -0.12
MARK3-210ENST00000556463 MYO15BQ96JP2 1530 aa14.3□□□□□ -0.12
MARK3-210ENST00000556463 SHROOM4Q9ULL8 1493 aa14.29□□□□□ -0.12
MARK3-210ENST00000556463 CCDC180Q9P1Z9 1646 aa14.23□□□□□ -0.13
MARK3-210ENST00000556463 SUPT5HO00267 1087 aaKnown RBP14.16□□□□□ -0.14
MARK3-210ENST00000556463 PLPPR3Q6T4P5 718 aa14.11□□□□□ -0.15
MARK3-210ENST00000556463 DCAF1Q9Y4B6 1507 aa14.08□□□□□ -0.16
MARK3-210ENST00000556463 PPARGC1BQ86YN6 1023 aaKnown RBP14.06□□□□□ -0.16
MARK3-210ENST00000556463 KCNA4P22459 653 aa14□□□□□ -0.17
MARK3-210ENST00000556463 PCGF6Q9BYE7 350 aa13.94□□□□□ -0.18
MARK3-210ENST00000556463 CSRNP3Q8WYN3 585 aa13.91□□□□□ -0.18
MARK3-210ENST00000556463 MYT1Q01538 1121 aa13.88□□□□□ -0.19
MARK3-210ENST00000556463 RTN4Q9NQC3 1192 aaKnown RBP13.82□□□□□ -0.2
MARK3-210ENST00000556463 TRIM26Q12899 539 aaPredicted RBP13.72□□□□□ -0.21
MARK3-210ENST00000556463 LOC105371045A0A1W2PR82 267 aa13.66□□□□□ -0.22
MARK3-210ENST00000556463 ABCC9O60706 1549 aa13.63□□□□□ -0.23
MARK3-210ENST00000556463 SCAF1Q9H7N4 1312 aaKnown RBP13.62□□□□□ -0.23
MARK3-210ENST00000556463 ZEB1P37275 1124 aaPredicted RBP13.58□□□□□ -0.24
MARK3-210ENST00000556463 ADRA2BP18089 450 aa13.49□□□□□ -0.25
MARK3-210ENST00000556463 RSF1Q96T23 1441 aaPredicted RBP13.44□□□□□ -0.26
MARK3-210ENST00000556463 RB1CC1Q8TDY2 1594 aa13.39□□□□□ -0.27
MARK3-210ENST00000556463 AMER1Q5JTC6 1135 aaPredicted RBP13.36□□□□□ -0.27
MARK3-210ENST00000556463 DCAF8L2P0C7V8 631 aa13.36□□□□□ -0.27
MARK3-210ENST00000556463 SLC4A1APQ9BWU0 796 aaKnown RBP13.34□□□□□ -0.27
MARK3-210ENST00000556463 GTF3C3Q9Y5Q9 886 aa13.29□□□□□ -0.28
MARK3-210ENST00000556463 TRIM41Q8WV44 630 aa13.23□□□□□ -0.29
MARK3-210ENST00000556463 EIF4G1Q04637 1599 aaKnown RBP13.21□□□□□ -0.3
MARK3-210ENST00000556463 SCRIBQ14160 1630 aa13.2□□□□□ -0.3
MARK3-210ENST00000556463 BCL11AQ9H165 835 aa13.2□□□□□ -0.3
MARK3-210ENST00000556463 ACIN1Q9UKV3 1341 aaKnown RBP13.19□□□□□ -0.3
MARK3-210ENST00000556463 YTHDC1Q96MU7 727 aaKnown RBP13.14□□□□□ -0.31
MARK3-210ENST00000556463 NEUROD1Q13562 356 aa13.14□□□□□ -0.31
MARK3-210ENST00000556463 CENPBP07199 599 aaPredicted RBP13.12□□□□□ -0.31
MARK3-210ENST00000556463 WRNQ14191 1432 aaPredicted RBP eCLIP13.11□□□□□ -0.31
MARK3-210ENST00000556463 MROH2BQ7Z745 1585 aa13.08□□□□□ -0.32
MARK3-210ENST00000556463 ZBTB22O15209 634 aa13.06□□□□□ -0.32
MARK3-210ENST00000556463 CECR2Q9BXF3 1484 aa13.05□□□□□ -0.32
MARK3-210ENST00000556463 BAZ1AQ9NRL2 1556 aaPredicted RBP13.04□□□□□ -0.32
MARK3-210ENST00000556463 PRKCSHP14314 528 aaPredicted RBP13.04□□□□□ -0.32
MARK3-210ENST00000556463 FAM9AQ8IZU1 332 aaPredicted RBP13.03□□□□□ -0.32
MARK3-210ENST00000556463 WIZO95785 1651 aa13.03□□□□□ -0.32
MARK3-210ENST00000556463 NCBP3Q53F19 620 aaKnown RBP13.01□□□□□ -0.33
MARK3-210ENST00000556463 NACADO15069 1562 aa12.99□□□□□ -0.33
MARK3-210ENST00000556463 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.98□□□□□ -0.33
MARK3-210ENST00000556463 DIEXFQ68CQ4 756 aaKnown RBP12.97□□□□□ -0.33
MARK3-210ENST00000556463 TTBK1Q5TCY1 1321 aaPredicted RBP12.96□□□□□ -0.33
MARK3-210ENST00000556463 SENP3Q9H4L4 574 aaPredicted RBP12.93□□□□□ -0.34
MARK3-210ENST00000556463 CCER1Q8TC90 406 aaPredicted RBP12.92□□□□□ -0.34
MARK3-210ENST00000556463 PPP6R1Q9UPN7 881 aa12.92□□□□□ -0.34
MARK3-210ENST00000556463 TNIKQ9UKE5 1360 aa12.88□□□□□ -0.35
MARK3-210ENST00000556463 CEP162Q5TB80 1403 aa12.87□□□□□ -0.35
MARK3-210ENST00000556463 TOP2AP11388 1531 aaKnown RBP12.86□□□□□ -0.35
MARK3-210ENST00000556463 CCDC88BA6NC98 1476 aa12.85□□□□□ -0.35
MARK3-210ENST00000556463 EEA1Q15075 1411 aa12.82□□□□□ -0.36
MARK3-210ENST00000556463 ZNF316A6NFI3 1004 aaPredicted RBP12.82□□□□□ -0.36
MARK3-210ENST00000556463 SMARCA2P51531 1590 aa12.81□□□□□ -0.36
MARK3-210ENST00000556463 ABCC8Q09428 1581 aa12.8□□□□□ -0.36
MARK3-210ENST00000556463 SOGA1O94964 1423 aa12.75□□□□□ -0.37
MARK3-210ENST00000556463 SMARCA4P51532 1647 aa12.75□□□□□ -0.37
MARK3-210ENST00000556463 ERICH6Q7L0X2 663 aa12.74□□□□□ -0.37
MARK3-210ENST00000556463 ANP32EQ9BTT0 268 aa12.7□□□□□ -0.38
MARK3-210ENST00000556463 KIF21BO75037 1637 aa12.7□□□□□ -0.38
MARK3-210ENST00000556463 GOLGA3Q08378 1498 aa12.7□□□□□ -0.38
MARK3-210ENST00000556463 RUSC2Q8N2Y8 1516 aa12.69□□□□□ -0.38
MARK3-210ENST00000556463 MIER1Q8N108 512 aa12.67□□□□□ -0.38
MARK3-210ENST00000556463 NPM3O75607 178 aaKnown RBP12.63□□□□□ -0.39
MARK3-210ENST00000556463 CLSPNQ9HAW4 1339 aa12.62□□□□□ -0.39
MARK3-210ENST00000556463 PEG3Q9GZU2 1588 aa12.61□□□□□ -0.39
MARK3-210ENST00000556463 UNC13AQ9UPW8 1703 aa12.6□□□□□ -0.39
MARK3-210ENST00000556463 DAXXQ9UER7 740 aaPredicted RBP12.6□□□□□ -0.39
MARK3-210ENST00000556463 BAZ1BQ9UIG0 1483 aaKnown RBP12.6□□□□□ -0.39
MARK3-210ENST00000556463 CEP164Q9UPV0 1460 aa12.6□□□□□ -0.39
MARK3-210ENST00000556463 VPS8Q8N3P4 1428 aa12.58□□□□□ -0.4
MARK3-210ENST00000556463 PPP4R3CPQ6ZMV5 832 aa12.58□□□□□ -0.4
MARK3-210ENST00000556463 CLIP1P30622 1438 aa12.57□□□□□ -0.4
MARK3-210ENST00000556463 BCANQ96GW7 911 aa12.56□□□□□ -0.4
MARK3-210ENST00000556463 SYNJ1O43426 1573 aa12.55□□□□□ -0.4
MARK3-210ENST00000556463 TAOK2Q9UL54 1235 aa12.51□□□□□ -0.41
MARK3-210ENST00000556463 CUX2O14529 1486 aa12.51□□□□□ -0.41
MARK3-210ENST00000556463 DHX57Q6P158 1386 aaKnown RBP12.49□□□□□ -0.41
MARK3-210ENST00000556463 APLP2Q06481 763 aa12.48□□□□□ -0.41
MARK3-210ENST00000556463 SUPT16HQ9Y5B9 1047 aaKnown RBP12.48□□□□□ -0.41
MARK3-210ENST00000556463 UBTFP17480 764 aaKnown RBP12.47□□□□□ -0.41
MARK3-210ENST00000556463 TIMELESSQ9UNS1 1208 aa12.45□□□□□ -0.42
MARK3-210ENST00000556463 ANO8Q9HCE9 1232 aaPredicted RBP12.45□□□□□ -0.42
MARK3-210ENST00000556463 RAPGEF2Q9Y4G8 1499 aa12.45□□□□□ -0.42
MARK3-210ENST00000556463 CCDC136Q96JN2 1154 aa12.44□□□□□ -0.42
MARK3-210ENST00000556463 ERICH3Q5RHP9 1530 aa12.42□□□□□ -0.42
MARK3-210ENST00000556463 HNRNPUL2Q1KMD3 747 aaKnown RBP12.42□□□□□ -0.42
MARK3-210ENST00000556463 RRBP1Q9P2E9 1410 aaKnown RBP12.42□□□□□ -0.42
MARK3-210ENST00000556463 PLCB2Q00722 1185 aa12.41□□□□□ -0.42
MARK3-210ENST00000556463 FKBP8Q14318 412 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms