Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
RNF40O75150 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RNF40O75150 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
RNF40O75150 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC19.89■□□□□ 0.77
RNF40O75150 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.89■□□□□ 0.77
RNF40O75150 LTBR-211ENST00000543190 785 ntTSL 3 BASIC19.89■□□□□ 0.77
RNF40O75150 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
RNF40O75150 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RNF40O75150 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RNF40O75150 AP000692.2-201ENST00000608391 879 ntBASIC19.89■□□□□ 0.77
RNF40O75150 ABALON-201ENST00000629058 1903 ntBASIC19.89■□□□□ 0.77
RNF40O75150 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RNF40O75150 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
RNF40O75150 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
RNF40O75150 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
RNF40O75150 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RNF40O75150 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC19.88■□□□□ 0.77
RNF40O75150 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
RNF40O75150 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.88■□□□□ 0.77
RNF40O75150 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RNF40O75150 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RNF40O75150 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC19.88■□□□□ 0.77
RNF40O75150 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
RNF40O75150 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
RNF40O75150 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
RNF40O75150 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RNF40O75150 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
RNF40O75150 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
RNF40O75150 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
RNF40O75150 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
RNF40O75150 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RNF40O75150 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC19.88■□□□□ 0.77
RNF40O75150 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
RNF40O75150 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC19.88■□□□□ 0.77
RNF40O75150 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
RNF40O75150 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC19.88■□□□□ 0.77
RNF40O75150 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.88■□□□□ 0.77
RNF40O75150 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC19.88■□□□□ 0.77
RNF40O75150 HLA-A-209ENST00000638375 975 ntBASIC19.88■□□□□ 0.77
RNF40O75150 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC19.88■□□□□ 0.77
RNF40O75150 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
RNF40O75150 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RNF40O75150 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
RNF40O75150 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RNF40O75150 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RNF40O75150 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
RNF40O75150 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
RNF40O75150 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC19.87■□□□□ 0.77
RNF40O75150 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
RNF40O75150 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.87■□□□□ 0.77
RNF40O75150 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC19.87■□□□□ 0.77
RNF40O75150 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RNF40O75150 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
RNF40O75150 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.87■□□□□ 0.77
RNF40O75150 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RNF40O75150 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.87■□□□□ 0.77
RNF40O75150 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
RNF40O75150 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
RNF40O75150 HIST1H2APS4-201ENST00000362070 348 ntBASIC19.87■□□□□ 0.77
RNF40O75150 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
RNF40O75150 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC19.87■□□□□ 0.77
RNF40O75150 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC19.87■□□□□ 0.77
RNF40O75150 BX664615.1-201ENST00000443558 458 ntBASIC19.87■□□□□ 0.77
RNF40O75150 AC008040.2-201ENST00000461049 708 ntBASIC19.87■□□□□ 0.77
RNF40O75150 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.87■□□□□ 0.77
RNF40O75150 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC19.87■□□□□ 0.77
RNF40O75150 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC19.87■□□□□ 0.77
RNF40O75150 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RNF40O75150 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RNF40O75150 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
RNF40O75150 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC19.87■□□□□ 0.77
RNF40O75150 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
RNF40O75150 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RNF40O75150 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RNF40O75150 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
RNF40O75150 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RNF40O75150 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RNF40O75150 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
RNF40O75150 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
RNF40O75150 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RNF40O75150 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
RNF40O75150 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RNF40O75150 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RNF40O75150 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
RNF40O75150 EML3-212ENST00000494176 2901 ntTSL 2 BASIC19.86■□□□□ 0.77
RNF40O75150 EML3-216ENST00000529309 2909 ntTSL 2 BASIC19.86■□□□□ 0.77
RNF40O75150 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
RNF40O75150 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
RNF40O75150 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RNF40O75150 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
RNF40O75150 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RNF40O75150 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RNF40O75150 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
RNF40O75150 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
RNF40O75150 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
RNF40O75150 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
RNF40O75150 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC19.86■□□□□ 0.77
RNF40O75150 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
RNF40O75150 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RNF40O75150 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms