Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SDC3O75056 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SDC3O75056 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
SDC3O75056 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
SDC3O75056 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SDC3O75056 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC18.01■□□□□ 0.47
SDC3O75056 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SDC3O75056 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SDC3O75056 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SDC3O75056 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
SDC3O75056 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SDC3O75056 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
SDC3O75056 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SDC3O75056 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.01■□□□□ 0.47
SDC3O75056 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SDC3O75056 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC18.01■□□□□ 0.47
SDC3O75056 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SDC3O75056 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
SDC3O75056 NUS1P2-201ENST00000417358 873 ntBASIC18.01■□□□□ 0.47
SDC3O75056 AC091607.1-201ENST00000490318 1060 ntBASIC18.01■□□□□ 0.47
SDC3O75056 AC079776.4-201ENST00000511039 504 ntBASIC18.01■□□□□ 0.47
SDC3O75056 AL160237.2-201ENST00000556165 472 ntBASIC18.01■□□□□ 0.47
SDC3O75056 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC18.01■□□□□ 0.47
SDC3O75056 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC18.01■□□□□ 0.47
SDC3O75056 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SDC3O75056 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.01■□□□□ 0.47
SDC3O75056 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18.01■□□□□ 0.47
SDC3O75056 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SDC3O75056 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
SDC3O75056 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SDC3O75056 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SDC3O75056 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SDC3O75056 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.01■□□□□ 0.47
SDC3O75056 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.01■□□□□ 0.47
SDC3O75056 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.01■□□□□ 0.47
SDC3O75056 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
SDC3O75056 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18■□□□□ 0.47
SDC3O75056 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SDC3O75056 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SDC3O75056 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SDC3O75056 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
SDC3O75056 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SDC3O75056 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SDC3O75056 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC18■□□□□ 0.47
SDC3O75056 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC18■□□□□ 0.47
SDC3O75056 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
SDC3O75056 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18■□□□□ 0.47
SDC3O75056 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SDC3O75056 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC18■□□□□ 0.47
SDC3O75056 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC18■□□□□ 0.47
SDC3O75056 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18■□□□□ 0.47
SDC3O75056 KRT16P4-201ENST00000453883 522 ntBASIC18■□□□□ 0.47
SDC3O75056 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
SDC3O75056 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC18■□□□□ 0.47
SDC3O75056 TPM1-218ENST00000559281 851 ntTSL 5 BASIC18■□□□□ 0.47
SDC3O75056 AC009065.1-201ENST00000564055 1225 ntBASIC18■□□□□ 0.47
SDC3O75056 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18■□□□□ 0.47
SDC3O75056 AP005901.3-202ENST00000581653 237 ntBASIC18■□□□□ 0.47
SDC3O75056 AL353801.3-201ENST00000609898 542 ntBASIC18■□□□□ 0.47
SDC3O75056 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC18■□□□□ 0.47
SDC3O75056 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC18■□□□□ 0.47
SDC3O75056 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SDC3O75056 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18■□□□□ 0.47
SDC3O75056 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
SDC3O75056 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18■□□□□ 0.47
SDC3O75056 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18■□□□□ 0.47
SDC3O75056 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SDC3O75056 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
SDC3O75056 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18■□□□□ 0.47
SDC3O75056 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
SDC3O75056 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18■□□□□ 0.47
SDC3O75056 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SDC3O75056 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.99■□□□□ 0.47
SDC3O75056 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SDC3O75056 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
SDC3O75056 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SDC3O75056 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
SDC3O75056 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
SDC3O75056 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SDC3O75056 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SDC3O75056 NSUN5P1-202ENST00000421140 1535 ntBASIC17.99■□□□□ 0.47
SDC3O75056 MTMR9LP-203ENST00000426597 1545 ntBASIC17.99■□□□□ 0.47
SDC3O75056 NSUN5P2-203ENST00000457352 1529 ntBASIC17.99■□□□□ 0.47
SDC3O75056 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.99■□□□□ 0.47
SDC3O75056 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.99■□□□□ 0.47
SDC3O75056 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
SDC3O75056 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SDC3O75056 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SDC3O75056 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
SDC3O75056 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SDC3O75056 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
SDC3O75056 IGHV3-47-201ENST00000425060 335 ntBASIC17.99■□□□□ 0.47
SDC3O75056 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.99■□□□□ 0.47
SDC3O75056 RN7SL606P-201ENST00000472779 293 ntBASIC17.99■□□□□ 0.47
SDC3O75056 VENTXP7-201ENST00000475503 772 ntBASIC17.99■□□□□ 0.47
SDC3O75056 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.99■□□□□ 0.47
SDC3O75056 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC17.99■□□□□ 0.47
SDC3O75056 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
SDC3O75056 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.99■□□□□ 0.47
SDC3O75056 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms