Protein–RNA interactions for Protein: Q496Y0

LONRF3, LON peptidase N-terminal domain and RING finger protein 3, humanhuman

Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LONRF3Q496Y0 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LONRF3Q496Y0 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LONRF3Q496Y0 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
LONRF3Q496Y0 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC21.07■□□□□ 0.96
LONRF3Q496Y0 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
LONRF3Q496Y0 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LONRF3Q496Y0 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LONRF3Q496Y0 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LONRF3Q496Y0 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LONRF3Q496Y0 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC21.06■□□□□ 0.96
LONRF3Q496Y0 ABALON-201ENST00000629058 1903 ntBASIC21.06■□□□□ 0.96
LONRF3Q496Y0 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
LONRF3Q496Y0 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LONRF3Q496Y0 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC21.06■□□□□ 0.96
LONRF3Q496Y0 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
LONRF3Q496Y0 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC21.06■□□□□ 0.96
LONRF3Q496Y0 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC21.06■□□□□ 0.96
LONRF3Q496Y0 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC21.06■□□□□ 0.96
LONRF3Q496Y0 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC21.06■□□□□ 0.96
LONRF3Q496Y0 RBM42-202ENST00000586618 771 ntTSL 3 BASIC21.06■□□□□ 0.96
LONRF3Q496Y0 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC21.06■□□□□ 0.96
LONRF3Q496Y0 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LONRF3Q496Y0 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
LONRF3Q496Y0 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC21.06■□□□□ 0.96
LONRF3Q496Y0 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC21.06■□□□□ 0.96
LONRF3Q496Y0 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
LONRF3Q496Y0 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LONRF3Q496Y0 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LONRF3Q496Y0 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LONRF3Q496Y0 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LONRF3Q496Y0 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
LONRF3Q496Y0 AC073508.3-201ENST00000619697 1419 ntBASIC21.05■□□□□ 0.96
LONRF3Q496Y0 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC21.05■□□□□ 0.96
LONRF3Q496Y0 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LONRF3Q496Y0 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LONRF3Q496Y0 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
LONRF3Q496Y0 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC21.05■□□□□ 0.96
LONRF3Q496Y0 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC21.05■□□□□ 0.96
LONRF3Q496Y0 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC21.05■□□□□ 0.96
LONRF3Q496Y0 AC104076.2-201ENST00000448912 469 ntBASIC21.05■□□□□ 0.96
LONRF3Q496Y0 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LONRF3Q496Y0 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC21.05■□□□□ 0.96
LONRF3Q496Y0 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
LONRF3Q496Y0 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LONRF3Q496Y0 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LONRF3Q496Y0 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LONRF3Q496Y0 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LONRF3Q496Y0 AC026471.1-201ENST00000564629 3026 ntBASIC21.05■□□□□ 0.96
LONRF3Q496Y0 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
LONRF3Q496Y0 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LONRF3Q496Y0 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LONRF3Q496Y0 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC21.05■□□□□ 0.96
LONRF3Q496Y0 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LONRF3Q496Y0 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC21.05■□□□□ 0.96
LONRF3Q496Y0 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 LIN28AP1-201ENST00000429574 405 ntBASIC21.04■□□□□ 0.96
LONRF3Q496Y0 ATP5G1P1-201ENST00000448724 379 ntBASIC21.04■□□□□ 0.96
LONRF3Q496Y0 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 AC008622.2-201ENST00000617006 1229 ntBASIC21.04■□□□□ 0.96
LONRF3Q496Y0 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 EML3-217ENST00000531557 2509 ntTSL 5 BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
LONRF3Q496Y0 TBC1D3P2-202ENST00000577902 1649 ntBASIC21.04■□□□□ 0.96
LONRF3Q496Y0 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
LONRF3Q496Y0 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
LONRF3Q496Y0 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LONRF3Q496Y0 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LONRF3Q496Y0 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
LONRF3Q496Y0 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
LONRF3Q496Y0 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
LONRF3Q496Y0 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
LONRF3Q496Y0 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
LONRF3Q496Y0 TSPY14P-201ENST00000303979 915 ntBASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms