Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDH9Q9HC56 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDH9Q9HC56 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
PCDH9Q9HC56 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDH9Q9HC56 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.18■□□□□ 0.66
PCDH9Q9HC56 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC19.18■□□□□ 0.66
PCDH9Q9HC56 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC19.18■□□□□ 0.66
PCDH9Q9HC56 CYGB-204ENST00000589342 815 ntTSL 3 BASIC19.18■□□□□ 0.66
PCDH9Q9HC56 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDH9Q9HC56 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC19.18■□□□□ 0.66
PCDH9Q9HC56 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDH9Q9HC56 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDH9Q9HC56 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC19.18■□□□□ 0.66
PCDH9Q9HC56 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDH9Q9HC56 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDH9Q9HC56 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDH9Q9HC56 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC19.17■□□□□ 0.66
PCDH9Q9HC56 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.17■□□□□ 0.66
PCDH9Q9HC56 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.17■□□□□ 0.66
PCDH9Q9HC56 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC19.17■□□□□ 0.66
PCDH9Q9HC56 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
PCDH9Q9HC56 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDH9Q9HC56 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDH9Q9HC56 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC19.17■□□□□ 0.66
PCDH9Q9HC56 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC19.17■□□□□ 0.66
PCDH9Q9HC56 RCC2P3-201ENST00000418112 1537 ntBASIC19.17■□□□□ 0.66
PCDH9Q9HC56 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.17■□□□□ 0.66
PCDH9Q9HC56 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDH9Q9HC56 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
PCDH9Q9HC56 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDH9Q9HC56 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDH9Q9HC56 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC19.17■□□□□ 0.66
PCDH9Q9HC56 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDH9Q9HC56 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC19.17■□□□□ 0.66
PCDH9Q9HC56 AP005242.2-201ENST00000580065 1175 ntBASIC19.17■□□□□ 0.66
PCDH9Q9HC56 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC19.17■□□□□ 0.66
PCDH9Q9HC56 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PCDH9Q9HC56 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PCDH9Q9HC56 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDH9Q9HC56 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDH9Q9HC56 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC19.17■□□□□ 0.66
PCDH9Q9HC56 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PCDH9Q9HC56 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDH9Q9HC56 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.17■□□□□ 0.66
PCDH9Q9HC56 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
PCDH9Q9HC56 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDH9Q9HC56 CD276-201ENST00000318424 2738 ntTSL 5 BASIC19.16■□□□□ 0.66
PCDH9Q9HC56 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH9Q9HC56 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
PCDH9Q9HC56 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH9Q9HC56 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH9Q9HC56 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC19.16■□□□□ 0.66
PCDH9Q9HC56 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH9Q9HC56 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH9Q9HC56 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
PCDH9Q9HC56 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC19.16■□□□□ 0.66
PCDH9Q9HC56 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC19.16■□□□□ 0.66
PCDH9Q9HC56 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH9Q9HC56 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH9Q9HC56 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH9Q9HC56 MIR1238-201ENST00000408483 83 ntBASIC19.16■□□□□ 0.66
PCDH9Q9HC56 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH9Q9HC56 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH9Q9HC56 AL390955.1-201ENST00000428694 934 ntBASIC19.16■□□□□ 0.66
PCDH9Q9HC56 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC19.16■□□□□ 0.66
PCDH9Q9HC56 FITM1-202ENST00000559294 800 ntBASIC19.16■□□□□ 0.66
PCDH9Q9HC56 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH9Q9HC56 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
PCDH9Q9HC56 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH9Q9HC56 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH9Q9HC56 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH9Q9HC56 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC19.16■□□□□ 0.66
PCDH9Q9HC56 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH9Q9HC56 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH9Q9HC56 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH9Q9HC56 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
PCDH9Q9HC56 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH9Q9HC56 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH9Q9HC56 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PCDH9Q9HC56 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.15■□□□□ 0.66
PCDH9Q9HC56 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDH9Q9HC56 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC19.15■□□□□ 0.66
PCDH9Q9HC56 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
PCDH9Q9HC56 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDH9Q9HC56 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDH9Q9HC56 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC19.15■□□□□ 0.66
PCDH9Q9HC56 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDH9Q9HC56 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDH9Q9HC56 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC19.15■□□□□ 0.66
PCDH9Q9HC56 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDH9Q9HC56 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDH9Q9HC56 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PCDH9Q9HC56 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC19.15■□□□□ 0.66
PCDH9Q9HC56 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
PCDH9Q9HC56 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PCDH9Q9HC56 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDH9Q9HC56 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDH9Q9HC56 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC19.15■□□□□ 0.66
PCDH9Q9HC56 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC19.15■□□□□ 0.66
PCDH9Q9HC56 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms