Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SOX2P48431 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SOX2P48431 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SOX2P48431 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC16.35■□□□□ 0.21
SOX2P48431 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SOX2P48431 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
SOX2P48431 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SOX2P48431 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SOX2P48431 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
SOX2P48431 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SOX2P48431 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC16.35■□□□□ 0.21
SOX2P48431 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC16.35■□□□□ 0.21
SOX2P48431 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC16.35■□□□□ 0.21
SOX2P48431 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC16.35■□□□□ 0.21
SOX2P48431 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC16.35■□□□□ 0.21
SOX2P48431 TK2-208ENST00000545043 1120 ntTSL 2 BASIC16.35■□□□□ 0.21
SOX2P48431 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SOX2P48431 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC16.35■□□□□ 0.21
SOX2P48431 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC16.35■□□□□ 0.21
SOX2P48431 GAMT-205ENST00000640762 751 ntTSL 5 BASIC16.35■□□□□ 0.21
SOX2P48431 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.35■□□□□ 0.21
SOX2P48431 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC16.35■□□□□ 0.21
SOX2P48431 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SOX2P48431 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SOX2P48431 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SOX2P48431 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC16.35■□□□□ 0.21
SOX2P48431 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC16.35■□□□□ 0.21
SOX2P48431 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SOX2P48431 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
SOX2P48431 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
SOX2P48431 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SOX2P48431 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC16.35■□□□□ 0.21
SOX2P48431 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SOX2P48431 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
SOX2P48431 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX2P48431 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX2P48431 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SOX2P48431 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC16.34■□□□□ 0.21
SOX2P48431 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.34■□□□□ 0.21
SOX2P48431 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SOX2P48431 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
SOX2P48431 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX2P48431 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SOX2P48431 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX2P48431 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
SOX2P48431 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX2P48431 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX2P48431 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX2P48431 GATB-213ENST00000515812 1893 ntTSL 5 BASIC16.34■□□□□ 0.21
SOX2P48431 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX2P48431 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
SOX2P48431 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
SOX2P48431 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
SOX2P48431 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
SOX2P48431 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC16.34■□□□□ 0.21
SOX2P48431 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
SOX2P48431 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC16.34■□□□□ 0.21
SOX2P48431 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC16.34■□□□□ 0.21
SOX2P48431 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC16.34■□□□□ 0.21
SOX2P48431 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
SOX2P48431 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC16.34■□□□□ 0.21
SOX2P48431 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC16.34■□□□□ 0.21
SOX2P48431 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC16.34■□□□□ 0.21
SOX2P48431 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX2P48431 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC16.34■□□□□ 0.21
SOX2P48431 AC068587.9-201ENST00000641814 219 ntBASIC16.34■□□□□ 0.21
SOX2P48431 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX2P48431 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX2P48431 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX2P48431 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX2P48431 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SOX2P48431 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SOX2P48431 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SOX2P48431 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
SOX2P48431 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX2P48431 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX2P48431 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
SOX2P48431 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SOX2P48431 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX2P48431 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
SOX2P48431 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX2P48431 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX2P48431 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX2P48431 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SOX2P48431 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC16.33■□□□□ 0.21
SOX2P48431 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SOX2P48431 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
SOX2P48431 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SOX2P48431 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.21
SOX2P48431 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
SOX2P48431 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SOX2P48431 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
SOX2P48431 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
SOX2P48431 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC16.33■□□□□ 0.21
SOX2P48431 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
SOX2P48431 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SOX2P48431 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC16.33■□□□□ 0.2
SOX2P48431 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.33■□□□□ 0.2
SOX2P48431 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.33■□□□□ 0.2
SOX2P48431 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms