Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTP4A1Q93096 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTP4A1Q93096 NIFKP9-201ENST00000419265 221 ntBASIC16.7■□□□□ 0.26
PTP4A1Q93096 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PTP4A1Q93096 PPP1R14BP5-201ENST00000440334 435 ntBASIC16.7■□□□□ 0.26
PTP4A1Q93096 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC16.7■□□□□ 0.26
PTP4A1Q93096 UBE2SP1-201ENST00000450587 669 ntBASIC16.7■□□□□ 0.26
PTP4A1Q93096 RPS2P4-201ENST00000476944 856 ntBASIC16.7■□□□□ 0.26
PTP4A1Q93096 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC16.7■□□□□ 0.26
PTP4A1Q93096 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC16.7■□□□□ 0.26
PTP4A1Q93096 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PTP4A1Q93096 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
PTP4A1Q93096 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTP4A1Q93096 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.7■□□□□ 0.26
PTP4A1Q93096 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
PTP4A1Q93096 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
PTP4A1Q93096 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.7■□□□□ 0.26
PTP4A1Q93096 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTP4A1Q93096 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTP4A1Q93096 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC16.7■□□□□ 0.26
PTP4A1Q93096 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.7■□□□□ 0.26
PTP4A1Q93096 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.7■□□□□ 0.26
PTP4A1Q93096 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTP4A1Q93096 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTP4A1Q93096 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC16.7■□□□□ 0.26
PTP4A1Q93096 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC16.7■□□□□ 0.26
PTP4A1Q93096 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTP4A1Q93096 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTP4A1Q93096 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTP4A1Q93096 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
PTP4A1Q93096 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTP4A1Q93096 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PTP4A1Q93096 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTP4A1Q93096 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC16.69■□□□□ 0.26
PTP4A1Q93096 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
PTP4A1Q93096 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PTP4A1Q93096 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC16.69■□□□□ 0.26
PTP4A1Q93096 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC16.69■□□□□ 0.26
PTP4A1Q93096 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTP4A1Q93096 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC16.69■□□□□ 0.26
PTP4A1Q93096 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC16.69■□□□□ 0.26
PTP4A1Q93096 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC16.69■□□□□ 0.26
PTP4A1Q93096 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC16.69■□□□□ 0.26
PTP4A1Q93096 SPIB-206ENST00000596074 847 ntTSL 2 BASIC16.69■□□□□ 0.26
PTP4A1Q93096 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC16.69■□□□□ 0.26
PTP4A1Q93096 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTP4A1Q93096 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PTP4A1Q93096 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PTP4A1Q93096 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.69■□□□□ 0.26
PTP4A1Q93096 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTP4A1Q93096 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
PTP4A1Q93096 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.69■□□□□ 0.26
PTP4A1Q93096 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTP4A1Q93096 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC16.69■□□□□ 0.26
PTP4A1Q93096 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTP4A1Q93096 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTP4A1Q93096 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTP4A1Q93096 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTP4A1Q93096 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTP4A1Q93096 ESPNP-201ENST00000270691 2015 ntBASIC16.69■□□□□ 0.26
PTP4A1Q93096 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
PTP4A1Q93096 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTP4A1Q93096 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTP4A1Q93096 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC16.68■□□□□ 0.26
PTP4A1Q93096 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTP4A1Q93096 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTP4A1Q93096 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
PTP4A1Q93096 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTP4A1Q93096 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTP4A1Q93096 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PTP4A1Q93096 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTP4A1Q93096 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTP4A1Q93096 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC16.68■□□□□ 0.26
PTP4A1Q93096 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC16.68■□□□□ 0.26
PTP4A1Q93096 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTP4A1Q93096 GCSHP5-201ENST00000443090 522 ntBASIC16.68■□□□□ 0.26
PTP4A1Q93096 AL158047.1-201ENST00000445918 881 ntBASIC16.68■□□□□ 0.26
PTP4A1Q93096 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PTP4A1Q93096 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC16.68■□□□□ 0.26
PTP4A1Q93096 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC16.68■□□□□ 0.26
PTP4A1Q93096 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC16.68■□□□□ 0.26
PTP4A1Q93096 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC16.68■□□□□ 0.26
PTP4A1Q93096 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC16.68■□□□□ 0.26
PTP4A1Q93096 AL353708.3-201ENST00000610272 989 ntBASIC16.68■□□□□ 0.26
PTP4A1Q93096 ABBA01031674.1-201ENST00000635145 728 ntBASIC16.68■□□□□ 0.26
PTP4A1Q93096 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC16.68■□□□□ 0.26
PTP4A1Q93096 AC008556.1-201ENST00000610908 2040 ntBASIC16.68■□□□□ 0.26
PTP4A1Q93096 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PTP4A1Q93096 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTP4A1Q93096 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTP4A1Q93096 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PTP4A1Q93096 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
PTP4A1Q93096 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTP4A1Q93096 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
PTP4A1Q93096 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PTP4A1Q93096 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
PTP4A1Q93096 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTP4A1Q93096 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC16.67■□□□□ 0.26
PTP4A1Q93096 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTP4A1Q93096 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms