Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC21.12■□□□□ 0.97
ERCC4Q92889 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ERCC4Q92889 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC21.12■□□□□ 0.97
ERCC4Q92889 RPS2P4-201ENST00000476944 856 ntBASIC21.12■□□□□ 0.97
ERCC4Q92889 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC21.12■□□□□ 0.97
ERCC4Q92889 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC21.12■□□□□ 0.97
ERCC4Q92889 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
ERCC4Q92889 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ERCC4Q92889 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ERCC4Q92889 KATNBL1P6-202ENST00000562413 1466 ntBASIC21.12■□□□□ 0.97
ERCC4Q92889 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
ERCC4Q92889 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
ERCC4Q92889 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
ERCC4Q92889 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC21.12■□□□□ 0.97
ERCC4Q92889 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
ERCC4Q92889 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ERCC4Q92889 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
ERCC4Q92889 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
ERCC4Q92889 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
ERCC4Q92889 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
ERCC4Q92889 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
ERCC4Q92889 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
ERCC4Q92889 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
ERCC4Q92889 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
ERCC4Q92889 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
ERCC4Q92889 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC21.11■□□□□ 0.97
ERCC4Q92889 AC004980.1-204ENST00000429707 299 ntBASIC21.11■□□□□ 0.97
ERCC4Q92889 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC21.11■□□□□ 0.97
ERCC4Q92889 TK2-204ENST00000525974 1178 ntTSL 2 BASIC21.11■□□□□ 0.97
ERCC4Q92889 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC21.11■□□□□ 0.97
ERCC4Q92889 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC21.11■□□□□ 0.97
ERCC4Q92889 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
ERCC4Q92889 ABBA01031674.1-201ENST00000635145 728 ntBASIC21.11■□□□□ 0.97
ERCC4Q92889 AC073648.6-201ENST00000641589 218 ntBASIC21.11■□□□□ 0.97
ERCC4Q92889 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC21.11■□□□□ 0.97
ERCC4Q92889 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
ERCC4Q92889 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
ERCC4Q92889 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
ERCC4Q92889 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
ERCC4Q92889 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
ERCC4Q92889 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
ERCC4Q92889 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC21.11■□□□□ 0.97
ERCC4Q92889 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
ERCC4Q92889 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC21.1■□□□□ 0.97
ERCC4Q92889 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ERCC4Q92889 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
ERCC4Q92889 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
ERCC4Q92889 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
ERCC4Q92889 AC135776.1-201ENST00000319817 2481 ntBASIC21.1■□□□□ 0.97
ERCC4Q92889 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ERCC4Q92889 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
ERCC4Q92889 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC21.1■□□□□ 0.97
ERCC4Q92889 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC21.1■□□□□ 0.97
ERCC4Q92889 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC21.1■□□□□ 0.97
ERCC4Q92889 AC079598.2-202ENST00000546624 1451 ntBASIC21.1■□□□□ 0.97
ERCC4Q92889 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC21.1■□□□□ 0.97
ERCC4Q92889 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC21.1■□□□□ 0.97
ERCC4Q92889 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ERCC4Q92889 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
ERCC4Q92889 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ERCC4Q92889 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
ERCC4Q92889 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ERCC4Q92889 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ERCC4Q92889 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
ERCC4Q92889 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC21.1■□□□□ 0.97
ERCC4Q92889 AC099343.3-201ENST00000605834 2503 ntBASIC21.1■□□□□ 0.97
ERCC4Q92889 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC21.1■□□□□ 0.97
ERCC4Q92889 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC4Q92889 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC4Q92889 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC21.09■□□□□ 0.97
ERCC4Q92889 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
ERCC4Q92889 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC4Q92889 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC4Q92889 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC4Q92889 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC4Q92889 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC4Q92889 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC4Q92889 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC4Q92889 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC4Q92889 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC21.09■□□□□ 0.97
ERCC4Q92889 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC21.09■□□□□ 0.97
ERCC4Q92889 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
ERCC4Q92889 RN7SL471P-201ENST00000580476 299 ntBASIC21.09■□□□□ 0.97
ERCC4Q92889 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC21.09■□□□□ 0.97
ERCC4Q92889 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC4Q92889 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC21.09■□□□□ 0.97
ERCC4Q92889 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC21.09■□□□□ 0.97
ERCC4Q92889 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC21.09■□□□□ 0.97
ERCC4Q92889 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC4Q92889 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC21.09■□□□□ 0.97
ERCC4Q92889 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC21.09■□□□□ 0.97
ERCC4Q92889 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
ERCC4Q92889 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC4Q92889 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC4Q92889 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC4Q92889 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC4Q92889 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC4Q92889 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC4Q92889 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC4Q92889 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms