Protein–RNA interactions for Protein: O43175

PHGDH, D-3-phosphoglycerate dehydrogenase, humanhuman

Known RBP Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDHO43175 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PHGDHO43175 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.55■□□□□ 0.56
PHGDHO43175 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.55■□□□□ 0.56
PHGDHO43175 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.55■□□□□ 0.56
PHGDHO43175 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
PHGDHO43175 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PHGDHO43175 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PHGDHO43175 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
PHGDHO43175 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.54■□□□□ 0.56
PHGDHO43175 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PHGDHO43175 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PHGDHO43175 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
PHGDHO43175 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PHGDHO43175 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PHGDHO43175 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
PHGDHO43175 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PHGDHO43175 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PHGDHO43175 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.54■□□□□ 0.56
PHGDHO43175 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PHGDHO43175 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.54■□□□□ 0.56
PHGDHO43175 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PHGDHO43175 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC18.54■□□□□ 0.56
PHGDHO43175 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PHGDHO43175 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PHGDHO43175 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
PHGDHO43175 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
PHGDHO43175 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.54■□□□□ 0.56
PHGDHO43175 AC130371.2-201ENST00000619443 611 ntBASIC18.54■□□□□ 0.56
PHGDHO43175 AL359736.2-201ENST00000621992 437 ntBASIC18.54■□□□□ 0.56
PHGDHO43175 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PHGDHO43175 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PHGDHO43175 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
PHGDHO43175 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
PHGDHO43175 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PHGDHO43175 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
PHGDHO43175 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PHGDHO43175 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
PHGDHO43175 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
PHGDHO43175 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PHGDHO43175 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
PHGDHO43175 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
PHGDHO43175 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.53■□□□□ 0.56
PHGDHO43175 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.53■□□□□ 0.56
PHGDHO43175 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
PHGDHO43175 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
PHGDHO43175 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PHGDHO43175 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.53■□□□□ 0.56
PHGDHO43175 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PHGDHO43175 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.53■□□□□ 0.56
PHGDHO43175 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.53■□□□□ 0.56
PHGDHO43175 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
PHGDHO43175 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
PHGDHO43175 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PHGDHO43175 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
PHGDHO43175 B3GAT3P1-201ENST00000471720 806 ntBASIC18.53■□□□□ 0.56
PHGDHO43175 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
PHGDHO43175 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.53■□□□□ 0.56
PHGDHO43175 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
PHGDHO43175 MIR6786-201ENST00000616843 113 ntBASIC18.53■□□□□ 0.56
PHGDHO43175 FAM197Y4-202ENST00000622692 608 ntBASIC18.53■□□□□ 0.56
PHGDHO43175 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.53■□□□□ 0.56
PHGDHO43175 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PHGDHO43175 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PHGDHO43175 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PHGDHO43175 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.52■□□□□ 0.56
PHGDHO43175 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
PHGDHO43175 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
PHGDHO43175 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
PHGDHO43175 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
PHGDHO43175 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PHGDHO43175 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
PHGDHO43175 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PHGDHO43175 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.52■□□□□ 0.56
PHGDHO43175 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PHGDHO43175 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
PHGDHO43175 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.52■□□□□ 0.56
PHGDHO43175 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PHGDHO43175 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18.52■□□□□ 0.56
PHGDHO43175 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC18.52■□□□□ 0.56
PHGDHO43175 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PHGDHO43175 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.52■□□□□ 0.55
PHGDHO43175 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
PHGDHO43175 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
PHGDHO43175 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.51■□□□□ 0.55
PHGDHO43175 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.51■□□□□ 0.55
PHGDHO43175 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.51■□□□□ 0.55
PHGDHO43175 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PHGDHO43175 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
PHGDHO43175 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.51■□□□□ 0.55
PHGDHO43175 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.51■□□□□ 0.55
PHGDHO43175 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.51■□□□□ 0.55
PHGDHO43175 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PHGDHO43175 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PHGDHO43175 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PHGDHO43175 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PHGDHO43175 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
PHGDHO43175 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.51■□□□□ 0.55
PHGDHO43175 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PHGDHO43175 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PHGDHO43175 MESTP1-201ENST00000404287 994 ntBASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms