Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VCX3AQ9NNX9 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
VCX3AQ9NNX9 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
VCX3AQ9NNX9 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VCX3AQ9NNX9 AC022211.2-201ENST00000585075 2527 ntBASIC17.44■□□□□ 0.38
VCX3AQ9NNX9 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 PCDH8P1-201ENST00000428983 2773 ntBASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 ZNF815P-204ENST00000434898 1737 ntBASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VCX3AQ9NNX9 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VCX3AQ9NNX9 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VCX3AQ9NNX9 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VCX3AQ9NNX9 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VCX3AQ9NNX9 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.42■□□□□ 0.38
VCX3AQ9NNX9 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.42■□□□□ 0.38
VCX3AQ9NNX9 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC17.42■□□□□ 0.38
VCX3AQ9NNX9 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VCX3AQ9NNX9 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VCX3AQ9NNX9 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC17.42■□□□□ 0.38
VCX3AQ9NNX9 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.42■□□□□ 0.38
VCX3AQ9NNX9 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VCX3AQ9NNX9 AC009299.2-201ENST00000482477 511 ntBASIC17.42■□□□□ 0.38
VCX3AQ9NNX9 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC17.42■□□□□ 0.38
VCX3AQ9NNX9 FGF8-207ENST00000618991 856 ntTSL 3 BASIC17.42■□□□□ 0.38
VCX3AQ9NNX9 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VCX3AQ9NNX9 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
VCX3AQ9NNX9 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.42■□□□□ 0.38
VCX3AQ9NNX9 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VCX3AQ9NNX9 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VCX3AQ9NNX9 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC17.42■□□□□ 0.38
VCX3AQ9NNX9 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VCX3AQ9NNX9 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC17.42■□□□□ 0.38
VCX3AQ9NNX9 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
VCX3AQ9NNX9 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.42■□□□□ 0.38
VCX3AQ9NNX9 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC17.42■□□□□ 0.38
VCX3AQ9NNX9 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.42■□□□□ 0.38
VCX3AQ9NNX9 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.41■□□□□ 0.38
VCX3AQ9NNX9 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCX3AQ9NNX9 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCX3AQ9NNX9 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.41■□□□□ 0.38
VCX3AQ9NNX9 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
VCX3AQ9NNX9 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
VCX3AQ9NNX9 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
VCX3AQ9NNX9 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
VCX3AQ9NNX9 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCX3AQ9NNX9 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCX3AQ9NNX9 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC17.41■□□□□ 0.38
VCX3AQ9NNX9 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCX3AQ9NNX9 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VCX3AQ9NNX9 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC17.41■□□□□ 0.38
VCX3AQ9NNX9 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCX3AQ9NNX9 CD44-222ENST00000526025 1052 ntTSL 2 BASIC17.41■□□□□ 0.38
VCX3AQ9NNX9 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC17.41■□□□□ 0.38
VCX3AQ9NNX9 AL355001.2-201ENST00000620617 1191 ntBASIC17.41■□□□□ 0.38
VCX3AQ9NNX9 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCX3AQ9NNX9 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VCX3AQ9NNX9 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCX3AQ9NNX9 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCX3AQ9NNX9 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCX3AQ9NNX9 MPST-204ENST00000404393 1329 ntTSL 5 BASIC17.41■□□□□ 0.38
VCX3AQ9NNX9 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC17.41■□□□□ 0.38
VCX3AQ9NNX9 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCX3AQ9NNX9 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCX3AQ9NNX9 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms