Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 AC093525.10-201ENST00000625130 1569 ntBASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 NCF1B-203ENST00000435988 1254 ntBASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 MIR935-201ENST00000401179 91 ntBASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 GUSBP6-202ENST00000438529 1198 ntBASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 AC008687.6-201ENST00000596318 630 ntBASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 MYC-209ENST00000641252 345 ntBASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 FEM1AP3-201ENST00000403722 1741 ntBASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHMP1AQ9HD42 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 TREX2-204ENST00000370212 861 ntTSL 5 BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 PRKY-204ENST00000533551 1019 ntBASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms