Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC30.84■■■□□ 2.53
IFT140Q96RY7 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC30.84■■■□□ 2.53
IFT140Q96RY7 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
IFT140Q96RY7 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
IFT140Q96RY7 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
IFT140Q96RY7 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
IFT140Q96RY7 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
IFT140Q96RY7 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
IFT140Q96RY7 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC30.83■■■□□ 2.53
IFT140Q96RY7 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
IFT140Q96RY7 AL035633.1-201ENST00000406139 838 ntBASIC30.83■■■□□ 2.53
IFT140Q96RY7 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC30.83■■■□□ 2.53
IFT140Q96RY7 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
IFT140Q96RY7 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC30.83■■■□□ 2.53
IFT140Q96RY7 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC30.83■■■□□ 2.53
IFT140Q96RY7 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
IFT140Q96RY7 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC30.83■■■□□ 2.53
IFT140Q96RY7 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
IFT140Q96RY7 AL356309.3-201ENST00000624132 1934 ntBASIC30.83■■■□□ 2.53
IFT140Q96RY7 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.53
IFT140Q96RY7 CENPM-204ENST00000402420 688 ntTSL 5 BASIC30.82■■■□□ 2.53
IFT140Q96RY7 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC30.82■■■□□ 2.53
IFT140Q96RY7 RPS29-206ENST00000557111 488 ntTSL 2 BASIC30.82■■■□□ 2.53
IFT140Q96RY7 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC30.82■■■□□ 2.53
IFT140Q96RY7 MTDHP5-201ENST00000598980 586 ntBASIC30.82■■■□□ 2.53
IFT140Q96RY7 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC30.82■■■□□ 2.53
IFT140Q96RY7 AC107918.4-202ENST00000641623 219 ntBASIC30.82■■■□□ 2.53
IFT140Q96RY7 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
IFT140Q96RY7 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC30.82■■■□□ 2.52
IFT140Q96RY7 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC30.82■■■□□ 2.52
IFT140Q96RY7 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
IFT140Q96RY7 AC009947.1-201ENST00000444350 727 ntBASIC30.82■■■□□ 2.52
IFT140Q96RY7 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC30.82■■■□□ 2.52
IFT140Q96RY7 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
IFT140Q96RY7 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC30.81■■■□□ 2.52
IFT140Q96RY7 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
IFT140Q96RY7 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC30.81■■■□□ 2.52
IFT140Q96RY7 AP002414.3-201ENST00000589352 1468 ntBASIC30.81■■■□□ 2.52
IFT140Q96RY7 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC30.81■■■□□ 2.52
IFT140Q96RY7 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC30.81■■■□□ 2.52
IFT140Q96RY7 AC073314.1-201ENST00000568729 2216 ntBASIC30.81■■■□□ 2.52
IFT140Q96RY7 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC30.81■■■□□ 2.52
IFT140Q96RY7 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC30.81■■■□□ 2.52
IFT140Q96RY7 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC30.81■■■□□ 2.52
IFT140Q96RY7 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC30.81■■■□□ 2.52
IFT140Q96RY7 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC30.81■■■□□ 2.52
IFT140Q96RY7 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC30.81■■■□□ 2.52
IFT140Q96RY7 COPE-211ENST00000600932 1144 ntTSL 5 BASIC30.81■■■□□ 2.52
IFT140Q96RY7 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC30.8■■■□□ 2.52
IFT140Q96RY7 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
IFT140Q96RY7 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC30.8■■■□□ 2.52
IFT140Q96RY7 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
IFT140Q96RY7 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
IFT140Q96RY7 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC30.8■■■□□ 2.52
IFT140Q96RY7 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
IFT140Q96RY7 BEX3-201ENST00000361298 921 ntTSL 2 BASIC30.8■■■□□ 2.52
IFT140Q96RY7 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC30.8■■■□□ 2.52
IFT140Q96RY7 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC30.8■■■□□ 2.52
IFT140Q96RY7 AC105339.3-201ENST00000560043 636 ntBASIC30.8■■■□□ 2.52
IFT140Q96RY7 CYGB-205ENST00000590175 830 ntTSL 3 BASIC30.8■■■□□ 2.52
IFT140Q96RY7 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC30.8■■■□□ 2.52
IFT140Q96RY7 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC30.8■■■□□ 2.52
IFT140Q96RY7 KRT8P50-201ENST00000562022 1438 ntBASIC30.8■■■□□ 2.52
IFT140Q96RY7 AL357033.4-201ENST00000617703 1807 ntBASIC30.79■■■□□ 2.52
IFT140Q96RY7 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC30.79■■■□□ 2.52
IFT140Q96RY7 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC30.79■■■□□ 2.52
IFT140Q96RY7 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC30.79■■■□□ 2.52
IFT140Q96RY7 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC30.79■■■□□ 2.52
IFT140Q96RY7 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC30.79■■■□□ 2.52
IFT140Q96RY7 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC30.79■■■□□ 2.52
IFT140Q96RY7 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC30.79■■■□□ 2.52
IFT140Q96RY7 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC30.79■■■□□ 2.52
IFT140Q96RY7 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC30.79■■■□□ 2.52
IFT140Q96RY7 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
IFT140Q96RY7 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC30.78■■■□□ 2.52
IFT140Q96RY7 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
IFT140Q96RY7 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC30.78■■■□□ 2.52
IFT140Q96RY7 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
IFT140Q96RY7 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC30.78■■■□□ 2.52
IFT140Q96RY7 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
IFT140Q96RY7 AC023274.1-201ENST00000418278 595 ntBASIC30.78■■■□□ 2.52
IFT140Q96RY7 FAM8A3P-201ENST00000427218 844 ntBASIC30.78■■■□□ 2.52
IFT140Q96RY7 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC30.78■■■□□ 2.52
IFT140Q96RY7 ALG1L5P-201ENST00000482043 771 ntBASIC30.78■■■□□ 2.52
IFT140Q96RY7 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC30.78■■■□□ 2.52
IFT140Q96RY7 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
IFT140Q96RY7 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
IFT140Q96RY7 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
IFT140Q96RY7 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
IFT140Q96RY7 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
IFT140Q96RY7 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
IFT140Q96RY7 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
IFT140Q96RY7 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC30.77■■■□□ 2.52
IFT140Q96RY7 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC30.77■■■□□ 2.52
IFT140Q96RY7 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC30.77■■■□□ 2.52
IFT140Q96RY7 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC30.77■■■□□ 2.52
IFT140Q96RY7 TP73-202ENST00000354437 2140 ntTSL 5 BASIC30.77■■■□□ 2.52
IFT140Q96RY7 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
IFT140Q96RY7 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
IFT140Q96RY7 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC30.77■■■□□ 2.52
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms