Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 AC091076.1-201ENST00000610741 619 ntBASIC5.75□□□□□ -1.49
SYNE1Q8NF91 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 GCSHP2-201ENST00000560971 527 ntBASIC5.75□□□□□ -1.49
SYNE1Q8NF91 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 NT5C-210ENST00000582160 860 ntTSL 2 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 ANKRD20A18P-201ENST00000359341 492 ntBASIC5.75□□□□□ -1.49
SYNE1Q8NF91 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC5.75□□□□□ -1.49
SYNE1Q8NF91 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 PWWP2AP1-201ENST00000429776 2273 ntBASIC5.75□□□□□ -1.49
SYNE1Q8NF91 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 AC131212.4-201ENST00000623606 975 ntBASIC5.75□□□□□ -1.49
SYNE1Q8NF91 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 AC092720.2-201ENST00000602388 1665 ntBASIC5.75□□□□□ -1.49
SYNE1Q8NF91 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 TSPY21P-201ENST00000433481 731 ntBASIC5.75□□□□□ -1.49
SYNE1Q8NF91 TSPY23P-201ENST00000440136 739 ntBASIC5.75□□□□□ -1.49
SYNE1Q8NF91 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 IRF5-214ENST00000613821 595 ntTSL 5 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms