Protein–RNA interactions for Protein: Q8IVM0

CCDC50, Coiled-coil domain-containing protein 50, humanhuman

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50Q8IVM0 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
CCDC50Q8IVM0 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
CCDC50Q8IVM0 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC50Q8IVM0 AC135050.7-201ENST00000624508 2218 ntBASIC19.7■□□□□ 0.74
CCDC50Q8IVM0 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC50Q8IVM0 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.69■□□□□ 0.74
CCDC50Q8IVM0 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
CCDC50Q8IVM0 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC50Q8IVM0 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC50Q8IVM0 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC50Q8IVM0 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC50Q8IVM0 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC50Q8IVM0 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC50Q8IVM0 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC19.69■□□□□ 0.74
CCDC50Q8IVM0 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC50Q8IVM0 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC50Q8IVM0 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC50Q8IVM0 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC19.69■□□□□ 0.74
CCDC50Q8IVM0 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC50Q8IVM0 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.69■□□□□ 0.74
CCDC50Q8IVM0 ADM-205ENST00000528544 586 ntTSL 2 BASIC19.69■□□□□ 0.74
CCDC50Q8IVM0 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC19.69■□□□□ 0.74
CCDC50Q8IVM0 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
CCDC50Q8IVM0 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC50Q8IVM0 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
CCDC50Q8IVM0 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
CCDC50Q8IVM0 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC50Q8IVM0 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
CCDC50Q8IVM0 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC50Q8IVM0 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC50Q8IVM0 AC018470.1-201ENST00000624790 3129 ntBASIC19.69■□□□□ 0.74
CCDC50Q8IVM0 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 NIFKP9-201ENST00000419265 221 ntBASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 KRT8P11-201ENST00000409686 1436 ntBASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC19.68■□□□□ 0.74
CCDC50Q8IVM0 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 RCC2P6-201ENST00000526625 1557 ntBASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 C1QBPP2-201ENST00000528754 825 ntBASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 HEIH-201ENST00000623091 1652 ntBASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 HTR7P1-201ENST00000538670 1336 ntBASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 AC126763.1-201ENST00000552015 2118 ntBASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
CCDC50Q8IVM0 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms