Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 BLVRB-204ENST00000601346 676 ntTSL 211.14□□□□□ -0.632e-6■□□□□ 9.4
SMNDC1O75940 PPP6R3-201ENST00000265636 4794 ntTSL 1 (best) BASIC11□□□□□ -0.651e-8■□□□□ 9.4
SMNDC1O75940 PPP6R3-223ENST00000531432 589 ntTSL 310.97□□□□□ -0.651e-8■□□□□ 9.4
SMNDC1O75940 PPP6R3-203ENST00000393800 5093 ntAPPRIS P4 TSL 1 (best) BASIC10.79□□□□□ -0.681e-8■□□□□ 9.4
SMNDC1O75940 TTC17-201ENST00000039989 4469 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.722e-6■□□□□ 9.4
SMNDC1O75940 PPP6R3-205ENST00000524845 2771 ntTSL 1 (best) BASIC10.51□□□□□ -0.731e-8■□□□□ 9.4
SMNDC1O75940 SRGAP2C-202ENST00000367123 7204 ntAPPRIS P1 TSL 5 BASIC10.43□□□□□ -0.741e-8■□□□□ 9.4
SMNDC1O75940 PPP6R3-202ENST00000265637 4783 ntTSL 5 BASIC10.43□□□□□ -0.741e-8■□□□□ 9.4
SMNDC1O75940 PPP6R3-226ENST00000534534 2968 ntTSL 2 BASIC10.15□□□□□ -0.781e-8■□□□□ 9.4
SMNDC1O75940 TIAL1-207ENST00000463089 907 ntTSL 510.03□□□□□ -0.83e-34■□□□□ 9.4
SMNDC1O75940 PPP6R3-214ENST00000527403 4862 ntTSL 5 BASIC9.95□□□□□ -0.821e-8■□□□□ 9.4
SMNDC1O75940 SRRT-205ENST00000449389 448 ntTSL 39.74□□□□□ -0.852e-6■□□□□ 9.4
SMNDC1O75940 PIK3CB-207ENST00000473435 904 ntTSL 59.37□□□□□ -0.912e-6■□□□□ 9.4
SMNDC1O75940 PPP6R3-218ENST00000529710 3228 ntTSL 1 (best) BASIC8.99□□□□□ -0.971e-8■□□□□ 9.4
SMNDC1O75940 ASB1-205ENST00000468122 493 ntTSL 58.69□□□□□ -1.022e-6■□□□□ 9.4
SMNDC1O75940 ITGB1-212ENST00000480226 585 ntTSL 48.5□□□□□ -1.053e-8■□□□□ 9.4
SMNDC1O75940 TTC17-206ENST00000525135 1048 ntTSL 28.28□□□□□ -1.082e-6■□□□□ 9.4
SMNDC1O75940 PPP6R3-206ENST00000524904 4292 ntAPPRIS ALT1 TSL 1 (best) BASIC8.2□□□□□ -1.11e-8■□□□□ 9.4
SMNDC1O75940 ITGB1-216ENST00000493758 366 ntTSL 38.02□□□□□ -1.133e-8■□□□□ 9.4
SMNDC1O75940 AP3D1-208ENST00000590683 723 ntTSL 57.86□□□□□ -1.152e-6■□□□□ 9.4
SMNDC1O75940 DPAGT1-205ENST00000442480 999 ntTSL 57.7□□□□□ -1.183e-8■□□□□ 9.4
SMNDC1O75940 PIK3CB-211ENST00000485060 612 ntTSL 37.55□□□□□ -1.22e-6■□□□□ 9.4
SMNDC1O75940 ITGB1-218ENST00000528877 546 ntTSL 47.47□□□□□ -1.213e-8■□□□□ 9.4
SMNDC1O75940 ITGB1-219ENST00000534049 562 ntTSL 47.47□□□□□ -1.213e-8■□□□□ 9.4
SMNDC1O75940 BCR-214ENST00000487679 231 ntTSL 1 (best)7.44□□□□□ -1.223e-8■□□□□ 9.4
SMNDC1O75940 DPAGT1-208ENST00000461999 2125 ntTSL 57.43□□□□□ -1.223e-8■□□□□ 9.4
SMNDC1O75940 TIAL1-205ENST00000436547 1401 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.233e-34■□□□□ 9.4
SMNDC1O75940 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.292e-6■□□□□ 9.4
SMNDC1O75940 TIAL1-203ENST00000369093 5072 ntTSL 2 BASIC6.95□□□□□ -1.33e-34■□□□□ 9.4
SMNDC1O75940 PIK3CB-208ENST00000477593 4658 ntAPPRIS P1 TSL 5 BASIC6.95□□□□□ -1.32e-6■□□□□ 9.4
SMNDC1O75940 DPAGT1-216ENST00000638850 1152 ntTSL 56.91□□□□□ -1.33e-8■□□□□ 9.4
SMNDC1O75940 TIAL1-202ENST00000369087 1566 ntTSL 26.78□□□□□ -1.323e-34■□□□□ 9.4
SMNDC1O75940 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC6.71□□□□□ -1.342e-6■□□□□ 9.4
SMNDC1O75940 DPAGT1-215ENST00000636404 700 ntTSL 56.54□□□□□ -1.363e-8■□□□□ 9.4
SMNDC1O75940 ITGB1-203ENST00000414670 500 ntTSL 36.47□□□□□ -1.373e-8■□□□□ 9.4
SMNDC1O75940 MBNL1-216ENST00000478535 1451 ntTSL 1 (best)6.42□□□□□ -1.382e-6■□□□□ 9.4
SMNDC1O75940 ITGB1-209ENST00000472147 668 ntTSL 36.32□□□□□ -1.43e-8■□□□□ 9.4
SMNDC1O75940 ITGB1-206ENST00000437302 445 ntTSL 55.78□□□□□ -1.483e-8■□□□□ 9.4
SMNDC1O75940 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC5.78□□□□□ -1.483e-8■□□□□ 9.4
SMNDC1O75940 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.72□□□□□ -1.492e-6■□□□□ 9.4
SMNDC1O75940 PIK3CB-213ENST00000493568 2347 ntTSL 25.55□□□□□ -1.522e-6■□□□□ 9.4
SMNDC1O75940 PIK3CB-209ENST00000481749 2396 ntTSL 25.38□□□□□ -1.552e-6■□□□□ 9.4
SMNDC1O75940 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC5.3□□□□□ -1.563e-8■□□□□ 9.4
SMNDC1O75940 TIAL1-209ENST00000470781 1727 ntTSL 25.27□□□□□ -1.573e-34■□□□□ 9.4
SMNDC1O75940 PIK3CB-206ENST00000469284 3164 ntTSL 54.9□□□□□ -1.622e-6■□□□□ 9.4
SMNDC1O75940 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.77□□□□□ -1.652e-6■□□□□ 9.4
SMNDC1O75940 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.56□□□□□ -1.682e-6■□□□□ 9.4
SMNDC1O75940 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.48□□□□□ -1.692e-6■□□□□ 9.4
SMNDC1O75940 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.16□□□□□ -1.742e-6■□□□□ 9.4
SMNDC1O75940 ITGB1-213ENST00000484088 580 ntTSL 44.07□□□□□ -1.763e-8■□□□□ 9.4
SMNDC1O75940 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.83□□□□□ -1.82e-6■□□□□ 9.4
SMNDC1O75940 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.43□□□□□ -1.862e-6■□□□□ 9.4
SMNDC1O75940 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.29□□□□□ -1.882e-6■□□□□ 9.4
SMNDC1O75940 MBNL1-222ENST00000497971 5051 ntTSL 1 (best)1.31□□□□□ -2.22e-6■□□□□ 9.4
SMNDC1O75940 NAP1L4-211ENST00000526023 477 ntTSL 515.8■□□□□ 0.121e-8■□□□□ 9.4
SMNDC1O75940 NAP1L4-207ENST00000469805 2294 ntTSL 315.58■□□□□ 0.081e-8■□□□□ 9.4
SMNDC1O75940 NAP1L4-206ENST00000469089 707 ntTSL 312.6□□□□□ -0.391e-8■□□□□ 9.4
SMNDC1O75940 EIF3B-203ENST00000413917 962 ntTSL 218.05■□□□□ 0.487e-13■□□□□ 9.4
SMNDC1O75940 EIF3B-204ENST00000431643 1074 ntTSL 515.2■□□□□ 0.027e-13■□□□□ 9.4
SMNDC1O75940 EIF3B-209ENST00000468250 602 ntTSL 26.64□□□□□ -1.357e-13■□□□□ 9.4
SMNDC1O75940 EIF3B-206ENST00000463229 552 ntTSL 56.57□□□□□ -1.367e-13■□□□□ 9.4
SMNDC1O75940 EIF3B-205ENST00000463026 633 ntTSL 26.46□□□□□ -1.387e-13■□□□□ 9.4
SMNDC1O75940 HNRNPD-205ENST00000507010 748 ntTSL 322.44■■□□□ 1.187e-13■□□□□ 9.4
SMNDC1O75940 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 11e-7■□□□□ 9.4
SMNDC1O75940 HNRNPD-209ENST00000513584 1240 ntTSL 221.29■■□□□ 17e-13■□□□□ 9.4
SMNDC1O75940 HNRNPD-204ENST00000503822 607 ntTSL 520.4■□□□□ 0.867e-13■□□□□ 9.4
SMNDC1O75940 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.791e-7■□□□□ 9.4
SMNDC1O75940 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.26■□□□□ 0.671e-7■□□□□ 9.4
SMNDC1O75940 HNRNPD-207ENST00000509107 583 ntTSL 518.78■□□□□ 0.67e-13■□□□□ 9.4
SMNDC1O75940 YJEFN3-202ENST00000458210 2785 ntTSL 218.27■□□□□ 0.511e-7■□□□□ 9.4
SMNDC1O75940 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC17.56■□□□□ 0.41e-7■□□□□ 9.4
SMNDC1O75940 AC011448.1-202ENST00000586674 1071 ntTSL 216.86■□□□□ 0.291e-7■□□□□ 9.4
SMNDC1O75940 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC15.49■□□□□ 0.071e-7■□□□□ 9.4
SMNDC1O75940 HNRNPD-212ENST00000515432 545 ntTSL 56.53□□□□□ -1.367e-13■□□□□ 9.4
SMNDC1O75940 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.486e-8■□□□□ 9.3
SMNDC1O75940 RAD23A-208ENST00000591499 1350 ntTSL 217.68■□□□□ 0.426e-8■□□□□ 9.3
SMNDC1O75940 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.286e-8■□□□□ 9.3
SMNDC1O75940 RAD23A-204ENST00000588329 1034 ntTSL 516.21■□□□□ 0.196e-8■□□□□ 9.3
SMNDC1O75940 RAD23A-210ENST00000593114 1691 ntTSL 514.66□□□□□ -0.066e-8■□□□□ 9.3
SMNDC1O75940 RAD23A-202ENST00000586375 894 ntTSL 313.91□□□□□ -0.186e-8■□□□□ 9.3
SMNDC1O75940 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC13.34□□□□□ -0.276e-8■□□□□ 9.3
SMNDC1O75940 RAD23A-206ENST00000590881 999 ntTSL 512.18□□□□□ -0.466e-8■□□□□ 9.3
SMNDC1O75940 RAD23A-205ENST00000588826 832 ntTSL 511.9□□□□□ -0.56e-8■□□□□ 9.3
SMNDC1O75940 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.45■□□□□ 0.549e-9■□□□□ 9.3
SMNDC1O75940 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.519e-9■□□□□ 9.3
SMNDC1O75940 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.64■□□□□ 0.419e-9■□□□□ 9.3
SMNDC1O75940 NAP1L4-209ENST00000492594 570 ntTSL 315.97■□□□□ 0.159e-9■□□□□ 9.3
SMNDC1O75940 NAP1L4-210ENST00000492685 850 ntTSL 57.49□□□□□ -1.219e-9■□□□□ 9.3
SMNDC1O75940 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC25.14■■□□□ 1.624e-6■□□□□ 9.3
SMNDC1O75940 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC25.07■■□□□ 1.64e-6■□□□□ 9.3
SMNDC1O75940 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC24.39■■□□□ 1.494e-6■□□□□ 9.3
SMNDC1O75940 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC24.04■■□□□ 1.444e-6■□□□□ 9.3
SMNDC1O75940 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.354e-6■□□□□ 9.3
SMNDC1O75940 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.894e-6■□□□□ 9.3
SMNDC1O75940 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.84e-6■□□□□ 9.3
SMNDC1O75940 HMBS-225ENST00000546302 707 ntTSL 514.23□□□□□ -0.132e-8■□□□□ 9.3
SMNDC1O75940 HMBS-213ENST00000542345 882 ntTSL 36.45□□□□□ -1.382e-8■□□□□ 9.3
SMNDC1O75940 LZTR1-202ENST00000414985 872 ntTSL 519.85■□□□□ 0.777e-7■□□□□ 9.3
SMNDC1O75940 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.137e-7■□□□□ 9.3
SMNDC1O75940 LZTR1-211ENST00000479606 3442 ntTSL 213.83□□□□□ -0.27e-7■□□□□ 9.3
Retrieved 100 of 11,362 protein–RNA pairs in 158.2 ms