RNA–Protein interactions for RNA: ENST00000534049.5

ITGB1-219, Transcript of integrin subunit beta 1, humanhuman

TSL 4

Gene ITGB1, Length 562 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-219ENST00000534049 AEBP2Q6ZN18 517 aaPredicted RBP23.43■■□□□ 1.34
ITGB1-219ENST00000534049 CHIC1Q5VXU3 224 aa22.78■■□□□ 1.24
ITGB1-219ENST00000534049 SENP3Q9H4L4 574 aaPredicted RBP20.11■□□□□ 0.81
ITGB1-219ENST00000534049 PHF23Q9BUL5 403 aaPredicted RBP19.9■□□□□ 0.78
ITGB1-219ENST00000534049 FOXD1Q16676 465 aa18.56■□□□□ 0.56
ITGB1-219ENST00000534049 PLPPR3Q6T4P5 718 aa18.47■□□□□ 0.55
ITGB1-219ENST00000534049 PPP6R1Q9UPN7 881 aa17.61■□□□□ 0.41
ITGB1-219ENST00000534049 ADRA2BP18089 450 aa17.6■□□□□ 0.41
ITGB1-219ENST00000534049 PIAS4Q8N2W9 510 aaPredicted RBP17.5■□□□□ 0.39
ITGB1-219ENST00000534049 MSH5O43196 834 aa17.35■□□□□ 0.37
ITGB1-219ENST00000534049 SCAF1Q9H7N4 1312 aaKnown RBP16.34■□□□□ 0.21
ITGB1-219ENST00000534049 PPP4R3CPQ6ZMV5 832 aa16.17■□□□□ 0.18
ITGB1-219ENST00000534049 POTEDQ86YR6 584 aa16.06■□□□□ 0.16
ITGB1-219ENST00000534049 MAPK8IP2Q13387 824 aaPredicted RBP15.99■□□□□ 0.15
ITGB1-219ENST00000534049 DMRT2Q9Y5R5 561 aa15.97■□□□□ 0.15
ITGB1-219ENST00000534049 CNKSR2Q8WXI2 1034 aa15.83■□□□□ 0.12
ITGB1-219ENST00000534049 NCBP3Q53F19 620 aaKnown RBP15.81■□□□□ 0.12
ITGB1-219ENST00000534049 RNF216Q9NWF9 866 aaPredicted RBP15.58■□□□□ 0.08
ITGB1-219ENST00000534049 HOXD11P31277 338 aaPredicted RBP15.55■□□□□ 0.08
ITGB1-219ENST00000534049 KCNA4P22459 653 aa15.48■□□□□ 0.07
ITGB1-219ENST00000534049 NPM3O75607 178 aaKnown RBP15.43■□□□□ 0.06
ITGB1-219ENST00000534049 DCAF8L1A6NGE4 600 aa15.25■□□□□ 0.03
ITGB1-219ENST00000534049 DNAJC5BQ9UF47 199 aa15.17■□□□□ 0.02
ITGB1-219ENST00000534049 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.83□□□□□ -0.041e-12■□□□□ 10
ITGB1-219ENST00000534049 SLC4A1APQ9BWU0 796 aaKnown RBP14.78□□□□□ -0.04
ITGB1-219ENST00000534049 RNF39Q9H2S5 420 aa14.77□□□□□ -0.05
ITGB1-219ENST00000534049 C1QBPQ07021 282 aaKnown RBP14.66□□□□□ -0.06
ITGB1-219ENST00000534049 SLC4A2P04920 1241 aa14.58□□□□□ -0.08
ITGB1-219ENST00000534049 CACNB1Q02641 598 aaPredicted RBP14.55□□□□□ -0.08
ITGB1-219ENST00000534049 U3KPZ7 1027 aaPredicted RBP14.5□□□□□ -0.09
ITGB1-219ENST00000534049 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.44□□□□□ -0.1
ITGB1-219ENST00000534049 HNRNPUL2Q1KMD3 747 aaKnown RBP14.44□□□□□ -0.1
ITGB1-219ENST00000534049 FOXD4L1Q9NU39 408 aa14.41□□□□□ -0.1
ITGB1-219ENST00000534049 APLP2Q06481 763 aa14.38□□□□□ -0.11
ITGB1-219ENST00000534049 MYCNP04198 464 aaPredicted RBP14.36□□□□□ -0.11
ITGB1-219ENST00000534049 SAMD1Q6SPF0 538 aaPredicted RBP14.33□□□□□ -0.12
ITGB1-219ENST00000534049 ZBTB22O15209 634 aa14.18□□□□□ -0.14
ITGB1-219ENST00000534049 CAPN15O75808 1086 aa14.15□□□□□ -0.14
ITGB1-219ENST00000534049 ZNF219Q9P2Y4 722 aaPredicted RBP14.12□□□□□ -0.15
ITGB1-219ENST00000534049 SPINK5Q9NQ38 1064 aaPredicted RBP14.11□□□□□ -0.15
ITGB1-219ENST00000534049 ATXN8OSP0DMR3 200 aa14.01□□□□□ -0.17
ITGB1-219ENST00000534049 EHMT2Q96KQ7 1210 aa14.01□□□□□ -0.17
ITGB1-219ENST00000534049 TRHP20396 242 aaPredicted RBP14□□□□□ -0.17
ITGB1-219ENST00000534049 CSRNP3Q8WYN3 585 aa13.96□□□□□ -0.17
ITGB1-219ENST00000534049 DSG3P32926 999 aa13.95□□□□□ -0.18
ITGB1-219ENST00000534049 ATF5Q9Y2D1 282 aaPredicted RBP13.8□□□□□ -0.2
ITGB1-219ENST00000534049 ABCB7O75027 752 aa13.79□□□□□ -0.2
ITGB1-219ENST00000534049 POLA2Q14181 598 aa13.73□□□□□ -0.21
ITGB1-219ENST00000534049 ZBTB12Q9Y330 459 aaPredicted RBP13.67□□□□□ -0.22
ITGB1-219ENST00000534049 FBLN2P98095 1184 aa13.46□□□□□ -0.25
ITGB1-219ENST00000534049 RBM42Q9BTD8 480 aaKnown RBP13.45□□□□□ -0.26
ITGB1-219ENST00000534049 OSCARQ8IYS5 282 aa13.26□□□□□ -0.29
ITGB1-219ENST00000534049 MKRN4PQ13434 485 aaPredicted RBP13.24□□□□□ -0.29
ITGB1-219ENST00000534049 SPDYE2BA6NHP3 402 aa13.21□□□□□ -0.29
ITGB1-219ENST00000534049 SPDYE6P0CI01 402 aa13.21□□□□□ -0.29
ITGB1-219ENST00000534049 SPDYE2Q495Y8 402 aa13.21□□□□□ -0.29
ITGB1-219ENST00000534049 AKT1S1Q96B36 256 aa13.17□□□□□ -0.3
ITGB1-219ENST00000534049 ZNF692Q9BU19 519 aaPredicted RBP13.06□□□□□ -0.32
ITGB1-219ENST00000534049 SSUH2Q9Y2M2 353 aa13.03□□□□□ -0.32
ITGB1-219ENST00000534049 REM2Q8IYK8 340 aaPredicted RBP12.98□□□□□ -0.33
ITGB1-219ENST00000534049 SPDYE4A6NLX3 237 aa12.92□□□□□ -0.34
ITGB1-219ENST00000534049 CHRDL2Q6WN34 429 aa12.87□□□□□ -0.35
ITGB1-219ENST00000534049 SPDYE1Q8NFV5 336 aaPredicted RBP12.87□□□□□ -0.35
ITGB1-219ENST00000534049 PABPN1Q86U42 306 aaKnown RBP eCLIP12.86□□□□□ -0.35
ITGB1-219ENST00000534049 PITPNM1O00562 1244 aa12.81□□□□□ -0.36
ITGB1-219ENST00000534049 CLEC11AQ9Y240 323 aa12.74□□□□□ -0.37
ITGB1-219ENST00000534049 STAG3Q9UJ98 1225 aa12.73□□□□□ -0.37
ITGB1-219ENST00000534049 POTEHQ6S545 545 aa12.71□□□□□ -0.37
ITGB1-219ENST00000534049 FKBP8Q14318 412 aa12.68□□□□□ -0.38
ITGB1-219ENST00000534049 PROM2Q8N271 834 aa12.68□□□□□ -0.38
ITGB1-219ENST00000534049 FXR2P51116 673 aaKnown RBP eCLIP12.65□□□□□ -0.382e-7■■□□□ 11.5
ITGB1-219ENST00000534049 PRR29P0C7W0 189 aa12.64□□□□□ -0.39
ITGB1-219ENST00000534049 PIP4P2Q8N4L2 257 aa12.62□□□□□ -0.39
ITGB1-219ENST00000534049 PRKAR2AP13861 404 aaKnown RBP12.51□□□□□ -0.41
ITGB1-219ENST00000534049 FBXO3Q9UK99 471 aa12.44□□□□□ -0.42
ITGB1-219ENST00000534049 PLEKHG5O94827 1062 aa12.38□□□□□ -0.43
ITGB1-219ENST00000534049 CHADLQ6NUI6 762 aa12.37□□□□□ -0.43
ITGB1-219ENST00000534049 CREBZFQ9NS37 354 aa12.36□□□□□ -0.43
ITGB1-219ENST00000534049 FARP1Q9Y4F1 1045 aaPredicted RBP12.33□□□□□ -0.44
ITGB1-219ENST00000534049 HAX1O00165 279 aa12.31□□□□□ -0.44
ITGB1-219ENST00000534049 NPM1P06748 294 aaKnown RBP eCLIP12.28□□□□□ -0.44
ITGB1-219ENST00000534049 MIER1Q8N108 512 aa12.28□□□□□ -0.44
ITGB1-219ENST00000534049 PLCD3Q8N3E9 789 aa12.26□□□□□ -0.45
ITGB1-219ENST00000534049 ZBTB47Q9UFB7 747 aaPredicted RBP12.26□□□□□ -0.45
ITGB1-219ENST00000534049 C19orf67A6NJJ6 358 aa12.22□□□□□ -0.45
ITGB1-219ENST00000534049 MNX1P50219 401 aaPredicted RBP12.19□□□□□ -0.46
ITGB1-219ENST00000534049 VASPP50552 380 aaPredicted RBP12.17□□□□□ -0.46
ITGB1-219ENST00000534049 PAK3O75914 559 aaPredicted RBP12.15□□□□□ -0.46
ITGB1-219ENST00000534049 CD44P16070 742 aaKnown RBP12.15□□□□□ -0.46
ITGB1-219ENST00000534049 SP7Q8TDD2 431 aaPredicted RBP12.14□□□□□ -0.47
ITGB1-219ENST00000534049 CLCN6P51797 869 aa12.09□□□□□ -0.47
ITGB1-219ENST00000534049 EVX2Q03828 476 aa12.04□□□□□ -0.48
ITGB1-219ENST00000534049 ZRANB1Q9UGI0 708 aa12.04□□□□□ -0.48
ITGB1-219ENST00000534049 KLHL34Q8N239 644 aa12.02□□□□□ -0.49
ITGB1-219ENST00000534049 ZNF579Q8NAF0 562 aaKnown RBP12.01□□□□□ -0.49
ITGB1-219ENST00000534049 NUBP1P53384 320 aa11.96□□□□□ -0.49
ITGB1-219ENST00000534049 FAM212AQ96EL1 285 aa11.96□□□□□ -0.49
ITGB1-219ENST00000534049 TSPYL2Q9H2G4 693 aaPredicted RBP11.94□□□□□ -0.5
ITGB1-219ENST00000534049 RASEFQ8IZ41 740 aa11.93□□□□□ -0.5
ITGB1-219ENST00000534049 IFNLR1Q8IU57 520 aaPredicted RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms