RNA–Protein interactions for RNA: ENST00000472147.1

ITGB1-209, Transcript of integrin subunit beta 1, humanhuman

TSL 3

Gene ITGB1, Length 668 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-209ENST00000472147 AEBP2Q6ZN18 517 aaPredicted RBP20.46■□□□□ 0.87
ITGB1-209ENST00000472147 CHIC1Q5VXU3 224 aa19.11■□□□□ 0.65
ITGB1-209ENST00000472147 SENP3Q9H4L4 574 aaPredicted RBP17.56■□□□□ 0.4
ITGB1-209ENST00000472147 PHF23Q9BUL5 403 aaPredicted RBP17.24■□□□□ 0.35
ITGB1-209ENST00000472147 POTEDQ86YR6 584 aa16.47■□□□□ 0.23
ITGB1-209ENST00000472147 FOXD1Q16676 465 aa16.46■□□□□ 0.23
ITGB1-209ENST00000472147 MSH5O43196 834 aa15.67■□□□□ 0.1
ITGB1-209ENST00000472147 PIAS4Q8N2W9 510 aaPredicted RBP15.21■□□□□ 0.03
ITGB1-209ENST00000472147 PLPPR3Q6T4P5 718 aa15.12■□□□□ 0.01
ITGB1-209ENST00000472147 PPP6R1Q9UPN7 881 aa14.86□□□□□ -0.03
ITGB1-209ENST00000472147 ADRA2BP18089 450 aa14.77□□□□□ -0.05
ITGB1-209ENST00000472147 NISCHQ9Y2I1 1504 aa14.55□□□□□ -0.08
ITGB1-209ENST00000472147 CACNB1Q02641 598 aaPredicted RBP13.88□□□□□ -0.19
ITGB1-209ENST00000472147 DMRT2Q9Y5R5 561 aa13.82□□□□□ -0.2
ITGB1-209ENST00000472147 MAPK8IP2Q13387 824 aaPredicted RBP13.78□□□□□ -0.2
ITGB1-209ENST00000472147 SCAF1Q9H7N4 1312 aaKnown RBP13.52□□□□□ -0.25
ITGB1-209ENST00000472147 ABCC9O60706 1549 aa13.37□□□□□ -0.27
ITGB1-209ENST00000472147 PPP4R3CPQ6ZMV5 832 aa13.35□□□□□ -0.27
ITGB1-209ENST00000472147 DCAF8L1A6NGE4 600 aa13.31□□□□□ -0.28
ITGB1-209ENST00000472147 RNF39Q9H2S5 420 aa13.3□□□□□ -0.28
ITGB1-209ENST00000472147 KCNA4P22459 653 aa13.16□□□□□ -0.3
ITGB1-209ENST00000472147 C1QBPQ07021 282 aaKnown RBP13.07□□□□□ -0.32
ITGB1-209ENST00000472147 HOXD11P31277 338 aaPredicted RBP13.04□□□□□ -0.32
ITGB1-209ENST00000472147 CCDC180Q9P1Z9 1646 aa13.01□□□□□ -0.33
ITGB1-209ENST00000472147 NCBP3Q53F19 620 aaKnown RBP12.99□□□□□ -0.33
ITGB1-209ENST00000472147 CNKSR2Q8WXI2 1034 aa12.95□□□□□ -0.34
ITGB1-209ENST00000472147 DNAJC5BQ9UF47 199 aa12.91□□□□□ -0.34
ITGB1-209ENST00000472147 NPM3O75607 178 aaKnown RBP12.85□□□□□ -0.35
ITGB1-209ENST00000472147 POTEHQ6S545 545 aa12.77□□□□□ -0.37
ITGB1-209ENST00000472147 RNF216Q9NWF9 866 aaPredicted RBP12.75□□□□□ -0.37
ITGB1-209ENST00000472147 RB1CC1Q8TDY2 1594 aa12.6□□□□□ -0.39
ITGB1-209ENST00000472147 DCAF8L2P0C7V8 631 aa12.58□□□□□ -0.4
ITGB1-209ENST00000472147 PABPN1Q86U42 306 aaKnown RBP eCLIP12.54□□□□□ -0.4
ITGB1-209ENST00000472147 SLC4A1APQ9BWU0 796 aaKnown RBP12.52□□□□□ -0.41
ITGB1-209ENST00000472147 NACADO15069 1562 aa12.51□□□□□ -0.41
ITGB1-209ENST00000472147 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.43□□□□□ -0.421e-12■□□□□ 10
ITGB1-209ENST00000472147 MYO15BQ96JP2 1530 aa12.3□□□□□ -0.44
ITGB1-209ENST00000472147 EHMT2Q96KQ7 1210 aa12.25□□□□□ -0.45
ITGB1-209ENST00000472147 DSG3P32926 999 aa12.23□□□□□ -0.45
ITGB1-209ENST00000472147 BICRAQ9NZM4 1560 aa12.19□□□□□ -0.46
ITGB1-209ENST00000472147 CSRNP3Q8WYN3 585 aa12.15□□□□□ -0.46
ITGB1-209ENST00000472147 ZBTB22O15209 634 aa12.14□□□□□ -0.47
ITGB1-209ENST00000472147 CAPN15O75808 1086 aa12.14□□□□□ -0.47
ITGB1-209ENST00000472147 SLC4A2P04920 1241 aa12.14□□□□□ -0.47
ITGB1-209ENST00000472147 SPINK5Q9NQ38 1064 aaPredicted RBP12.13□□□□□ -0.47
ITGB1-209ENST00000472147 DNAJC5Q9H3Z4 198 aa12.12□□□□□ -0.47
ITGB1-209ENST00000472147 CECR2Q9BXF3 1484 aa12.11□□□□□ -0.47
ITGB1-209ENST00000472147 SHROOM4Q9ULL8 1493 aa12.1□□□□□ -0.47
ITGB1-209ENST00000472147 UNC13AQ9UPW8 1703 aa12.1□□□□□ -0.47
ITGB1-209ENST00000472147 U3KPZ7 1027 aaPredicted RBP12.09□□□□□ -0.47
ITGB1-209ENST00000472147 FOXD4L1Q9NU39 408 aa12.06□□□□□ -0.48
ITGB1-209ENST00000472147 DCAF1Q9Y4B6 1507 aa12.02□□□□□ -0.48
ITGB1-209ENST00000472147 CC2D2AQ9P2K1 1620 aa12□□□□□ -0.49
ITGB1-209ENST00000472147 EIF4G1Q04637 1599 aaKnown RBP11.94□□□□□ -0.5
ITGB1-209ENST00000472147 ZCCHC6Q5VYS8 1495 aaKnown RBP11.94□□□□□ -0.5
ITGB1-209ENST00000472147 SCRIBQ14160 1630 aa11.86□□□□□ -0.51
ITGB1-209ENST00000472147 MYCNP04198 464 aaPredicted RBP11.84□□□□□ -0.51
ITGB1-209ENST00000472147 ABCB7O75027 752 aa11.8□□□□□ -0.52
ITGB1-209ENST00000472147 TRHP20396 242 aaPredicted RBP11.79□□□□□ -0.52
ITGB1-209ENST00000472147 ZNF219Q9P2Y4 722 aaPredicted RBP11.72□□□□□ -0.53
ITGB1-209ENST00000472147 CHRDL2Q6WN34 429 aa11.7□□□□□ -0.54
ITGB1-209ENST00000472147 RBM42Q9BTD8 480 aaKnown RBP11.68□□□□□ -0.54
ITGB1-209ENST00000472147 APLP2Q06481 763 aa11.67□□□□□ -0.54
ITGB1-209ENST00000472147 CUX2O14529 1486 aa11.66□□□□□ -0.54
ITGB1-209ENST00000472147 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.65□□□□□ -0.54
ITGB1-209ENST00000472147 ATXN8OSP0DMR3 200 aa11.65□□□□□ -0.54
ITGB1-209ENST00000472147 HNRNPUL2Q1KMD3 747 aaKnown RBP11.65□□□□□ -0.54
ITGB1-209ENST00000472147 SP7Q8TDD2 431 aaPredicted RBP11.65□□□□□ -0.54
ITGB1-209ENST00000472147 NCAPD3P42695 1498 aa11.63□□□□□ -0.55
ITGB1-209ENST00000472147 SAMD1Q6SPF0 538 aaPredicted RBP11.63□□□□□ -0.55
ITGB1-209ENST00000472147 ERCC6Q03468 1493 aa11.58□□□□□ -0.56
ITGB1-209ENST00000472147 ATF5Q9Y2D1 282 aaPredicted RBP11.57□□□□□ -0.56
ITGB1-209ENST00000472147 ATAD2BQ9ULI0 1458 aa11.5□□□□□ -0.57
ITGB1-209ENST00000472147 SMARCA2P51531 1590 aa11.41□□□□□ -0.58
ITGB1-209ENST00000472147 NESP48681 1621 aa11.38□□□□□ -0.59
ITGB1-209ENST00000472147 TRIM41Q8WV44 630 aa11.38□□□□□ -0.59
ITGB1-209ENST00000472147 HMGXB3Q12766 1538 aa11.38□□□□□ -0.59
ITGB1-209ENST00000472147 PDS5BQ9NTI5 1447 aa11.36□□□□□ -0.59
ITGB1-209ENST00000472147 BAZ1BQ9UIG0 1483 aaKnown RBP11.33□□□□□ -0.6
ITGB1-209ENST00000472147 POLA2Q14181 598 aa11.31□□□□□ -0.6
ITGB1-209ENST00000472147 SMARCA4P51532 1647 aa11.3□□□□□ -0.6
ITGB1-209ENST00000472147 OSCARQ8IYS5 282 aa11.29□□□□□ -0.6
ITGB1-209ENST00000472147 CADPSQ9ULU8 1353 aa11.28□□□□□ -0.6
ITGB1-209ENST00000472147 BAZ1AQ9NRL2 1556 aaPredicted RBP11.28□□□□□ -0.6
ITGB1-209ENST00000472147 LAMC3Q9Y6N6 1575 aa11.28□□□□□ -0.6
ITGB1-209ENST00000472147 PIP4P2Q8N4L2 257 aa11.28□□□□□ -0.6
ITGB1-209ENST00000472147 HAX1O00165 279 aa11.27□□□□□ -0.61
ITGB1-209ENST00000472147 AKT1S1Q96B36 256 aa11.27□□□□□ -0.61
ITGB1-209ENST00000472147 PEG3Q9GZU2 1588 aa11.25□□□□□ -0.61
ITGB1-209ENST00000472147 THOC2Q8NI27 1593 aaKnown RBP11.21□□□□□ -0.61
ITGB1-209ENST00000472147 REM2Q8IYK8 340 aaPredicted RBP11.17□□□□□ -0.62
ITGB1-209ENST00000472147 MROH2BQ7Z745 1585 aa11.16□□□□□ -0.62
ITGB1-209ENST00000472147 MRC2Q9UBG0 1479 aa11.16□□□□□ -0.62
ITGB1-209ENST00000472147 FXR2P51116 673 aaKnown RBP eCLIP11.1□□□□□ -0.63
ITGB1-209ENST00000472147 WDR62O43379 1518 aa11.09□□□□□ -0.63
ITGB1-209ENST00000472147 KIF21AQ7Z4S6 1674 aa11.08□□□□□ -0.64
ITGB1-209ENST00000472147 EVX2Q03828 476 aa11.08□□□□□ -0.64
ITGB1-209ENST00000472147 MKRN4PQ13434 485 aaPredicted RBP11.07□□□□□ -0.64
ITGB1-209ENST00000472147 CEP164Q9UPV0 1460 aa11.06□□□□□ -0.64
ITGB1-209ENST00000472147 PITPNM1O00562 1244 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms