RNA–Protein interactions for RNA: ENST00000493758.5

ITGB1-216, Transcript of integrin subunit beta 1, humanhuman

TSL 3

Gene ITGB1, Length 366 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-216ENST00000493758 AEBP2Q6ZN18 517 aaPredicted RBP24.65■■□□□ 1.54
ITGB1-216ENST00000493758 CHIC1Q5VXU3 224 aa24.1■■□□□ 1.45
ITGB1-216ENST00000493758 PHF23Q9BUL5 403 aaPredicted RBP21.14■□□□□ 0.97
ITGB1-216ENST00000493758 SENP3Q9H4L4 574 aaPredicted RBP21■□□□□ 0.95
ITGB1-216ENST00000493758 PLPPR3Q6T4P5 718 aa19.56■□□□□ 0.72
ITGB1-216ENST00000493758 FOXD1Q16676 465 aa19.41■□□□□ 0.7
ITGB1-216ENST00000493758 PPP6R1Q9UPN7 881 aa18.61■□□□□ 0.57
ITGB1-216ENST00000493758 ADRA2BP18089 450 aa18.56■□□□□ 0.56
ITGB1-216ENST00000493758 PIAS4Q8N2W9 510 aaPredicted RBP18.28■□□□□ 0.52
ITGB1-216ENST00000493758 MSH5O43196 834 aa18■□□□□ 0.47
ITGB1-216ENST00000493758 PPP4R3CPQ6ZMV5 832 aa17.16■□□□□ 0.34
ITGB1-216ENST00000493758 SCAF1Q9H7N4 1312 aaKnown RBP17.09■□□□□ 0.33
ITGB1-216ENST00000493758 MAPK8IP2Q13387 824 aaPredicted RBP16.81■□□□□ 0.28
ITGB1-216ENST00000493758 DMRT2Q9Y5R5 561 aa16.76■□□□□ 0.27
ITGB1-216ENST00000493758 NCBP3Q53F19 620 aaKnown RBP16.75■□□□□ 0.27
ITGB1-216ENST00000493758 CNKSR2Q8WXI2 1034 aa16.75■□□□□ 0.27
ITGB1-216ENST00000493758 KCNA4P22459 653 aa16.71■□□□□ 0.27
ITGB1-216ENST00000493758 NPM3O75607 178 aaKnown RBP16.49■□□□□ 0.23
ITGB1-216ENST00000493758 RNF216Q9NWF9 866 aaPredicted RBP16.46■□□□□ 0.23
ITGB1-216ENST00000493758 HOXD11P31277 338 aaPredicted RBP16.43■□□□□ 0.22
ITGB1-216ENST00000493758 POTEDQ86YR6 584 aa16.37■□□□□ 0.21
ITGB1-216ENST00000493758 DNAJC5BQ9UF47 199 aa16.28■□□□□ 0.2
ITGB1-216ENST00000493758 SLC4A1APQ9BWU0 796 aaKnown RBP15.91■□□□□ 0.14
ITGB1-216ENST00000493758 DCAF8L1A6NGE4 600 aa15.81■□□□□ 0.12
ITGB1-216ENST00000493758 SLC4A2P04920 1241 aa15.58■□□□□ 0.08
ITGB1-216ENST00000493758 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.5■□□□□ 0.071e-12■□□□□ 10
ITGB1-216ENST00000493758 FOXD4L1Q9NU39 408 aa15.46■□□□□ 0.07
ITGB1-216ENST00000493758 RNF39Q9H2S5 420 aa15.42■□□□□ 0.06
ITGB1-216ENST00000493758 ZBTB22O15209 634 aa15.41■□□□□ 0.06
ITGB1-216ENST00000493758 U3KPZ7 1027 aaPredicted RBP15.33■□□□□ 0.04
ITGB1-216ENST00000493758 EHMT2Q96KQ7 1210 aa15.32■□□□□ 0.04
ITGB1-216ENST00000493758 MYCNP04198 464 aaPredicted RBP15.28■□□□□ 0.04
ITGB1-216ENST00000493758 CSRNP3Q8WYN3 585 aa15.27■□□□□ 0.04
ITGB1-216ENST00000493758 C1QBPQ07021 282 aaKnown RBP15.24■□□□□ 0.03
ITGB1-216ENST00000493758 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.19■□□□□ 0.02
ITGB1-216ENST00000493758 HNRNPUL2Q1KMD3 747 aaKnown RBP15.19■□□□□ 0.02
ITGB1-216ENST00000493758 SAMD1Q6SPF0 538 aaPredicted RBP15.12■□□□□ 0.01
ITGB1-216ENST00000493758 APLP2Q06481 763 aa15.04■□□□□ -0
ITGB1-216ENST00000493758 ATXN8OSP0DMR3 200 aa15.01□□□□□ -0.01
ITGB1-216ENST00000493758 CACNB1Q02641 598 aaPredicted RBP14.91□□□□□ -0.02
ITGB1-216ENST00000493758 SPINK5Q9NQ38 1064 aaPredicted RBP14.84□□□□□ -0.03
ITGB1-216ENST00000493758 ZNF219Q9P2Y4 722 aaPredicted RBP14.81□□□□□ -0.04
ITGB1-216ENST00000493758 ATF5Q9Y2D1 282 aaPredicted RBP14.77□□□□□ -0.05
ITGB1-216ENST00000493758 CAPN15O75808 1086 aa14.75□□□□□ -0.05
ITGB1-216ENST00000493758 TRHP20396 242 aaPredicted RBP14.65□□□□□ -0.06
ITGB1-216ENST00000493758 DSG3P32926 999 aa14.61□□□□□ -0.07
ITGB1-216ENST00000493758 POLA2Q14181 598 aa14.45□□□□□ -0.1
ITGB1-216ENST00000493758 ABCB7O75027 752 aa14.44□□□□□ -0.1
ITGB1-216ENST00000493758 ZBTB12Q9Y330 459 aaPredicted RBP14.37□□□□□ -0.11
ITGB1-216ENST00000493758 FBLN2P98095 1184 aa14.2□□□□□ -0.14
ITGB1-216ENST00000493758 MKRN4PQ13434 485 aaPredicted RBP14.19□□□□□ -0.14
ITGB1-216ENST00000493758 OSCARQ8IYS5 282 aa14□□□□□ -0.17
ITGB1-216ENST00000493758 RBM42Q9BTD8 480 aaKnown RBP13.98□□□□□ -0.17
ITGB1-216ENST00000493758 SPDYE2BA6NHP3 402 aa13.94□□□□□ -0.18
ITGB1-216ENST00000493758 SPDYE6P0CI01 402 aa13.94□□□□□ -0.18
ITGB1-216ENST00000493758 SPDYE2Q495Y8 402 aa13.94□□□□□ -0.18
ITGB1-216ENST00000493758 SSUH2Q9Y2M2 353 aa13.86□□□□□ -0.19
ITGB1-216ENST00000493758 SPDYE4A6NLX3 237 aa13.82□□□□□ -0.2
ITGB1-216ENST00000493758 AKT1S1Q96B36 256 aa13.78□□□□□ -0.2
ITGB1-216ENST00000493758 ZNF692Q9BU19 519 aaPredicted RBP13.77□□□□□ -0.21
ITGB1-216ENST00000493758 PROM2Q8N271 834 aa13.76□□□□□ -0.21
ITGB1-216ENST00000493758 FKBP8Q14318 412 aa13.75□□□□□ -0.21
ITGB1-216ENST00000493758 PABPN1Q86U42 306 aaKnown RBP eCLIP13.6□□□□□ -0.23
ITGB1-216ENST00000493758 REM2Q8IYK8 340 aaPredicted RBP13.6□□□□□ -0.23
ITGB1-216ENST00000493758 SPDYE1Q8NFV5 336 aaPredicted RBP13.51□□□□□ -0.25
ITGB1-216ENST00000493758 STAG3Q9UJ98 1225 aa13.45□□□□□ -0.26
ITGB1-216ENST00000493758 PITPNM1O00562 1244 aa13.44□□□□□ -0.26
ITGB1-216ENST00000493758 FBXO3Q9UK99 471 aa13.38□□□□□ -0.27
ITGB1-216ENST00000493758 CHRDL2Q6WN34 429 aa13.35□□□□□ -0.27
ITGB1-216ENST00000493758 CLEC11AQ9Y240 323 aa13.3□□□□□ -0.28
ITGB1-216ENST00000493758 FXR2P51116 673 aaKnown RBP eCLIP13.25□□□□□ -0.29
ITGB1-216ENST00000493758 PRR29P0C7W0 189 aa13.24□□□□□ -0.29
ITGB1-216ENST00000493758 VASPP50552 380 aaPredicted RBP13.18□□□□□ -0.3
ITGB1-216ENST00000493758 PIP4P2Q8N4L2 257 aa13.16□□□□□ -0.3
ITGB1-216ENST00000493758 CREBZFQ9NS37 354 aa13.13□□□□□ -0.31
ITGB1-216ENST00000493758 PRKAR2AP13861 404 aaKnown RBP13.06□□□□□ -0.32
ITGB1-216ENST00000493758 PLEKHG5O94827 1062 aa13.04□□□□□ -0.32
ITGB1-216ENST00000493758 MNX1P50219 401 aaPredicted RBP13.04□□□□□ -0.32
ITGB1-216ENST00000493758 MIER1Q8N108 512 aa13.03□□□□□ -0.32
ITGB1-216ENST00000493758 PLCD3Q8N3E9 789 aa13.03□□□□□ -0.32
ITGB1-216ENST00000493758 ZBTB47Q9UFB7 747 aaPredicted RBP13.02□□□□□ -0.33
ITGB1-216ENST00000493758 CHADLQ6NUI6 762 aa12.99□□□□□ -0.33
ITGB1-216ENST00000493758 FARP1Q9Y4F1 1045 aaPredicted RBP12.97□□□□□ -0.33
ITGB1-216ENST00000493758 POTEHQ6S545 545 aa12.96□□□□□ -0.33
ITGB1-216ENST00000493758 IFNLR1Q8IU57 520 aaPredicted RBP12.96□□□□□ -0.33
ITGB1-216ENST00000493758 NPM1P06748 294 aaKnown RBP eCLIP12.91□□□□□ -0.34
ITGB1-216ENST00000493758 NUBP1P53384 320 aa12.82□□□□□ -0.36
ITGB1-216ENST00000493758 KLHL34Q8N239 644 aa12.82□□□□□ -0.36
ITGB1-216ENST00000493758 SPOCK2Q92563 424 aa12.82□□□□□ -0.36
ITGB1-216ENST00000493758 C19orf67A6NJJ6 358 aa12.79□□□□□ -0.36
ITGB1-216ENST00000493758 RASEFQ8IZ41 740 aa12.74□□□□□ -0.37
ITGB1-216ENST00000493758 FAM212AQ96EL1 285 aa12.71□□□□□ -0.37
ITGB1-216ENST00000493758 CD44P16070 742 aaKnown RBP12.7□□□□□ -0.38
ITGB1-216ENST00000493758 PAK3O75914 559 aaPredicted RBP12.68□□□□□ -0.38
ITGB1-216ENST00000493758 HAX1O00165 279 aa12.66□□□□□ -0.38
ITGB1-216ENST00000493758 GSE1Q14687 1217 aa12.66□□□□□ -0.38
ITGB1-216ENST00000493758 ZNF579Q8NAF0 562 aaKnown RBP12.64□□□□□ -0.39
ITGB1-216ENST00000493758 CCDC61Q9Y6R9 512 aa12.64□□□□□ -0.39
ITGB1-216ENST00000493758 TRIM41Q8WV44 630 aa12.61□□□□□ -0.39
ITGB1-216ENST00000493758 ZRANB1Q9UGI0 708 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms