RNA–Protein interactions for RNA: ENST00000528877.5

ITGB1-218, Transcript of integrin subunit beta 1, humanhuman

TSL 4

Gene ITGB1, Length 546 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-218ENST00000528877 AEBP2Q6ZN18 517 aaPredicted RBP23.56■■□□□ 1.36
ITGB1-218ENST00000528877 CHIC1Q5VXU3 224 aa22.78■■□□□ 1.24
ITGB1-218ENST00000528877 SENP3Q9H4L4 574 aaPredicted RBP20.47■□□□□ 0.87
ITGB1-218ENST00000528877 PHF23Q9BUL5 403 aaPredicted RBP19.94■□□□□ 0.78
ITGB1-218ENST00000528877 POTEDQ86YR6 584 aa19.55■□□□□ 0.72
ITGB1-218ENST00000528877 FOXD1Q16676 465 aa19.05■□□□□ 0.64
ITGB1-218ENST00000528877 PLPPR3Q6T4P5 718 aa18.47■□□□□ 0.55
ITGB1-218ENST00000528877 MSH5O43196 834 aa18.41■□□□□ 0.54
ITGB1-218ENST00000528877 NISCHQ9Y2I1 1504 aa17.62■□□□□ 0.41
ITGB1-218ENST00000528877 PIAS4Q8N2W9 510 aaPredicted RBP17.61■□□□□ 0.41
ITGB1-218ENST00000528877 PPP6R1Q9UPN7 881 aa17.61■□□□□ 0.41
ITGB1-218ENST00000528877 ADRA2BP18089 450 aa17.6■□□□□ 0.41
ITGB1-218ENST00000528877 SCAF1Q9H7N4 1312 aaKnown RBP16.34■□□□□ 0.21
ITGB1-218ENST00000528877 CACNB1Q02641 598 aaPredicted RBP16.33■□□□□ 0.2
ITGB1-218ENST00000528877 PPP4R3CPQ6ZMV5 832 aa16.17■□□□□ 0.18
ITGB1-218ENST00000528877 DMRT2Q9Y5R5 561 aa16.02■□□□□ 0.16
ITGB1-218ENST00000528877 MAPK8IP2Q13387 824 aaPredicted RBP15.99■□□□□ 0.15
ITGB1-218ENST00000528877 CNKSR2Q8WXI2 1034 aa15.83■□□□□ 0.12
ITGB1-218ENST00000528877 NCBP3Q53F19 620 aaKnown RBP15.81■□□□□ 0.12
ITGB1-218ENST00000528877 CCDC180Q9P1Z9 1646 aa15.81■□□□□ 0.12
ITGB1-218ENST00000528877 RNF216Q9NWF9 866 aaPredicted RBP15.58■□□□□ 0.08
ITGB1-218ENST00000528877 HOXD11P31277 338 aaPredicted RBP15.55■□□□□ 0.08
ITGB1-218ENST00000528877 RNF39Q9H2S5 420 aa15.52■□□□□ 0.08
ITGB1-218ENST00000528877 KCNA4P22459 653 aa15.48■□□□□ 0.07
ITGB1-218ENST00000528877 ABCC9O60706 1549 aa15.45■□□□□ 0.06
ITGB1-218ENST00000528877 NPM3O75607 178 aaKnown RBP15.43■□□□□ 0.06
ITGB1-218ENST00000528877 DCAF8L1A6NGE4 600 aa15.35■□□□□ 0.05
ITGB1-218ENST00000528877 C1QBPQ07021 282 aaKnown RBP15.32■□□□□ 0.04
ITGB1-218ENST00000528877 DNAJC5BQ9UF47 199 aa15.17■□□□□ 0.02
ITGB1-218ENST00000528877 POTEHQ6S545 545 aa15.16■□□□□ 0.02
ITGB1-218ENST00000528877 RB1CC1Q8TDY2 1594 aa14.9□□□□□ -0.02
ITGB1-218ENST00000528877 NACADO15069 1562 aa14.86□□□□□ -0.03
ITGB1-218ENST00000528877 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.83□□□□□ -0.041e-12■□□□□ 10
ITGB1-218ENST00000528877 MYO15BQ96JP2 1530 aa14.81□□□□□ -0.04
ITGB1-218ENST00000528877 SLC4A1APQ9BWU0 796 aaKnown RBP14.78□□□□□ -0.04
ITGB1-218ENST00000528877 ZCCHC6Q5VYS8 1495 aaKnown RBP14.69□□□□□ -0.06
ITGB1-218ENST00000528877 DCAF1Q9Y4B6 1507 aa14.66□□□□□ -0.06
ITGB1-218ENST00000528877 SLC4A2P04920 1241 aa14.58□□□□□ -0.08
ITGB1-218ENST00000528877 UNC13AQ9UPW8 1703 aa14.54□□□□□ -0.08
ITGB1-218ENST00000528877 DCAF8L2P0C7V8 631 aa14.5□□□□□ -0.09
ITGB1-218ENST00000528877 U3KPZ7 1027 aaPredicted RBP14.5□□□□□ -0.09
ITGB1-218ENST00000528877 BICRAQ9NZM4 1560 aa14.46□□□□□ -0.09
ITGB1-218ENST00000528877 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.44□□□□□ -0.1
ITGB1-218ENST00000528877 HNRNPUL2Q1KMD3 747 aaKnown RBP14.44□□□□□ -0.1
ITGB1-218ENST00000528877 FOXD4L1Q9NU39 408 aa14.41□□□□□ -0.1
ITGB1-218ENST00000528877 SHROOM4Q9ULL8 1493 aa14.41□□□□□ -0.1
ITGB1-218ENST00000528877 APLP2Q06481 763 aa14.38□□□□□ -0.11
ITGB1-218ENST00000528877 MYCNP04198 464 aaPredicted RBP14.36□□□□□ -0.11
ITGB1-218ENST00000528877 SAMD1Q6SPF0 538 aaPredicted RBP14.33□□□□□ -0.12
ITGB1-218ENST00000528877 PABPN1Q86U42 306 aaKnown RBP eCLIP14.33□□□□□ -0.12
ITGB1-218ENST00000528877 SCRIBQ14160 1630 aa14.3□□□□□ -0.12
ITGB1-218ENST00000528877 ZBTB22O15209 634 aa14.18□□□□□ -0.14
ITGB1-218ENST00000528877 DSG3P32926 999 aa14.16□□□□□ -0.14
ITGB1-218ENST00000528877 CAPN15O75808 1086 aa14.15□□□□□ -0.14
ITGB1-218ENST00000528877 ZNF219Q9P2Y4 722 aaPredicted RBP14.12□□□□□ -0.15
ITGB1-218ENST00000528877 SPINK5Q9NQ38 1064 aaPredicted RBP14.11□□□□□ -0.15
ITGB1-218ENST00000528877 EIF4G1Q04637 1599 aaKnown RBP14.09□□□□□ -0.15
ITGB1-218ENST00000528877 CC2D2AQ9P2K1 1620 aa14.03□□□□□ -0.16
ITGB1-218ENST00000528877 ATXN8OSP0DMR3 200 aa14.01□□□□□ -0.17
ITGB1-218ENST00000528877 EHMT2Q96KQ7 1210 aa14.01□□□□□ -0.17
ITGB1-218ENST00000528877 TRHP20396 242 aaPredicted RBP14□□□□□ -0.17
ITGB1-218ENST00000528877 CSRNP3Q8WYN3 585 aa13.96□□□□□ -0.17
ITGB1-218ENST00000528877 CECR2Q9BXF3 1484 aa13.94□□□□□ -0.18
ITGB1-218ENST00000528877 ATF5Q9Y2D1 282 aaPredicted RBP13.8□□□□□ -0.2
ITGB1-218ENST00000528877 ABCB7O75027 752 aa13.79□□□□□ -0.2
ITGB1-218ENST00000528877 SP7Q8TDD2 431 aaPredicted RBP13.75□□□□□ -0.21
ITGB1-218ENST00000528877 POLA2Q14181 598 aa13.73□□□□□ -0.21
ITGB1-218ENST00000528877 SMARCA4P51532 1647 aa13.72□□□□□ -0.21
ITGB1-218ENST00000528877 RBM42Q9BTD8 480 aaKnown RBP13.7□□□□□ -0.22
ITGB1-218ENST00000528877 NCAPD3P42695 1498 aa13.69□□□□□ -0.22
ITGB1-218ENST00000528877 BAZ1AQ9NRL2 1556 aaPredicted RBP13.69□□□□□ -0.22
ITGB1-218ENST00000528877 CHRDL2Q6WN34 429 aa13.68□□□□□ -0.22
ITGB1-218ENST00000528877 ZBTB12Q9Y330 459 aaPredicted RBP13.67□□□□□ -0.22
ITGB1-218ENST00000528877 HMGXB3Q12766 1538 aa13.67□□□□□ -0.22
ITGB1-218ENST00000528877 ATAD2BQ9ULI0 1458 aa13.67□□□□□ -0.22
ITGB1-218ENST00000528877 SMARCA2P51531 1590 aa13.66□□□□□ -0.22
ITGB1-218ENST00000528877 PEG3Q9GZU2 1588 aa13.66□□□□□ -0.22
ITGB1-218ENST00000528877 MROH2BQ7Z745 1585 aa13.54□□□□□ -0.24
ITGB1-218ENST00000528877 BAZ1BQ9UIG0 1483 aaKnown RBP13.53□□□□□ -0.24
ITGB1-218ENST00000528877 FBLN2P98095 1184 aa13.46□□□□□ -0.25
ITGB1-218ENST00000528877 LAMC3Q9Y6N6 1575 aa13.37□□□□□ -0.27
ITGB1-218ENST00000528877 WIZO95785 1651 aa13.37□□□□□ -0.27
ITGB1-218ENST00000528877 DNAJC5Q9H3Z4 198 aa13.36□□□□□ -0.27
ITGB1-218ENST00000528877 CUX2O14529 1486 aa13.36□□□□□ -0.27
ITGB1-218ENST00000528877 ERCC6Q03468 1493 aa13.35□□□□□ -0.27
ITGB1-218ENST00000528877 NESP48681 1621 aa13.34□□□□□ -0.27
ITGB1-218ENST00000528877 RSF1Q96T23 1441 aaPredicted RBP13.33□□□□□ -0.28
ITGB1-218ENST00000528877 TOP2AP11388 1531 aaKnown RBP13.29□□□□□ -0.28
ITGB1-218ENST00000528877 THOC2Q8NI27 1593 aaKnown RBP13.28□□□□□ -0.28
ITGB1-218ENST00000528877 OSCARQ8IYS5 282 aa13.26□□□□□ -0.29
ITGB1-218ENST00000528877 PDS5BQ9NTI5 1447 aa13.24□□□□□ -0.29
ITGB1-218ENST00000528877 CADPSQ9ULU8 1353 aa13.24□□□□□ -0.29
ITGB1-218ENST00000528877 MKRN4PQ13434 485 aaPredicted RBP13.24□□□□□ -0.29
ITGB1-218ENST00000528877 KIF21AQ7Z4S6 1674 aa13.22□□□□□ -0.29
ITGB1-218ENST00000528877 SPDYE2BA6NHP3 402 aa13.21□□□□□ -0.29
ITGB1-218ENST00000528877 SPDYE6P0CI01 402 aa13.21□□□□□ -0.29
ITGB1-218ENST00000528877 SPDYE2Q495Y8 402 aa13.21□□□□□ -0.29
ITGB1-218ENST00000528877 CFTRP13569 1480 aa13.18□□□□□ -0.3
ITGB1-218ENST00000528877 AKT1S1Q96B36 256 aa13.17□□□□□ -0.3
ITGB1-218ENST00000528877 HAX1O00165 279 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms