Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC15.24■□□□□ 0.03
CDX1P47902 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CDX1P47902 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CDX1P47902 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC15.24■□□□□ 0.03
CDX1P47902 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CDX1P47902 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CDX1P47902 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CDX1P47902 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
CDX1P47902 SAPCD2P4-201ENST00000424595 1171 ntBASIC15.24■□□□□ 0.03
CDX1P47902 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC15.24■□□□□ 0.03
CDX1P47902 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC15.24■□□□□ 0.03
CDX1P47902 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
CDX1P47902 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC15.24■□□□□ 0.03
CDX1P47902 DHDH-203ENST00000522614 776 ntTSL 5 BASIC15.24■□□□□ 0.03
CDX1P47902 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC15.24■□□□□ 0.03
CDX1P47902 RPS15-203ENST00000586096 570 ntTSL 2 BASIC15.24■□□□□ 0.03
CDX1P47902 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CDX1P47902 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC15.24■□□□□ 0.03
CDX1P47902 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC15.24■□□□□ 0.03
CDX1P47902 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CDX1P47902 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
CDX1P47902 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CDX1P47902 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CDX1P47902 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC15.24■□□□□ 0.03
CDX1P47902 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CDX1P47902 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC15.24■□□□□ 0.03
CDX1P47902 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CDX1P47902 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC15.24■□□□□ 0.03
CDX1P47902 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC15.24■□□□□ 0.03
CDX1P47902 GOLGA2P11-201ENST00000562660 1621 ntBASIC15.24■□□□□ 0.03
CDX1P47902 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
CDX1P47902 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC15.24■□□□□ 0.03
CDX1P47902 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
CDX1P47902 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CDX1P47902 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
CDX1P47902 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
CDX1P47902 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
CDX1P47902 AP001271.2-201ENST00000624018 1556 ntBASIC15.24■□□□□ 0.03
CDX1P47902 AC067852.2-201ENST00000590513 2313 ntBASIC15.23■□□□□ 0.03
CDX1P47902 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC15.23■□□□□ 0.03
CDX1P47902 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
CDX1P47902 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CDX1P47902 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC15.23■□□□□ 0.03
CDX1P47902 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CDX1P47902 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CDX1P47902 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CDX1P47902 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
CDX1P47902 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC15.23■□□□□ 0.03
CDX1P47902 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CDX1P47902 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC15.23■□□□□ 0.03
CDX1P47902 TUBB8P6-201ENST00000436895 1288 ntBASIC15.23■□□□□ 0.03
CDX1P47902 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC15.23■□□□□ 0.03
CDX1P47902 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC15.23■□□□□ 0.03
CDX1P47902 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC15.23■□□□□ 0.03
CDX1P47902 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CDX1P47902 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CDX1P47902 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CDX1P47902 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
CDX1P47902 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CDX1P47902 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CDX1P47902 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
CDX1P47902 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CDX1P47902 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CDX1P47902 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CDX1P47902 AC084018.2-201ENST00000613093 2607 ntBASIC15.23■□□□□ 0.03
CDX1P47902 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC15.23■□□□□ 0.03
CDX1P47902 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CDX1P47902 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CDX1P47902 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
CDX1P47902 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CDX1P47902 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDX1P47902 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDX1P47902 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
CDX1P47902 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDX1P47902 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC15.22■□□□□ 0.03
CDX1P47902 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDX1P47902 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC15.22■□□□□ 0.03
CDX1P47902 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDX1P47902 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC15.22■□□□□ 0.03
CDX1P47902 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDX1P47902 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC15.22■□□□□ 0.03
CDX1P47902 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDX1P47902 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
CDX1P47902 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDX1P47902 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CDX1P47902 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
CDX1P47902 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC15.22■□□□□ 0.03
CDX1P47902 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC15.22■□□□□ 0.03
CDX1P47902 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDX1P47902 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDX1P47902 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDX1P47902 KSR1P1-201ENST00000446298 240 ntBASIC15.22■□□□□ 0.03
CDX1P47902 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDX1P47902 FDX2-207ENST00000494368 584 ntTSL 4 BASIC15.22■□□□□ 0.03
CDX1P47902 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CDX1P47902 KRT18P16-201ENST00000510337 1294 ntBASIC15.22■□□□□ 0.03
CDX1P47902 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC15.22■□□□□ 0.03
CDX1P47902 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CDX1P47902 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC15.22■□□□□ 0.03
CDX1P47902 CD177P1-201ENST00000606252 935 ntBASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms