Protein–RNA interactions for Protein: P12035

KRT3, Keratin, type II cytoskeletal 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT3P12035 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC19.69■□□□□ 0.74
KRT3P12035 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.69■□□□□ 0.74
KRT3P12035 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC19.69■□□□□ 0.74
KRT3P12035 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC19.69■□□□□ 0.74
KRT3P12035 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC19.69■□□□□ 0.74
KRT3P12035 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
KRT3P12035 AC008556.1-201ENST00000610908 2040 ntBASIC19.69■□□□□ 0.74
KRT3P12035 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC19.69■□□□□ 0.74
KRT3P12035 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
KRT3P12035 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
KRT3P12035 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
KRT3P12035 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.69■□□□□ 0.74
KRT3P12035 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
KRT3P12035 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
KRT3P12035 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
KRT3P12035 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
KRT3P12035 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
KRT3P12035 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
KRT3P12035 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
KRT3P12035 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.68■□□□□ 0.74
KRT3P12035 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
KRT3P12035 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
KRT3P12035 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
KRT3P12035 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
KRT3P12035 AL023284.2-201ENST00000405850 579 ntBASIC19.68■□□□□ 0.74
KRT3P12035 MIR1238-201ENST00000408483 83 ntBASIC19.68■□□□□ 0.74
KRT3P12035 AL390955.1-201ENST00000428694 934 ntBASIC19.68■□□□□ 0.74
KRT3P12035 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.68■□□□□ 0.74
KRT3P12035 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC19.68■□□□□ 0.74
KRT3P12035 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
KRT3P12035 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
KRT3P12035 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
KRT3P12035 AC005082.1-201ENST00000413042 2259 ntBASIC19.68■□□□□ 0.74
KRT3P12035 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19.68■□□□□ 0.74
KRT3P12035 GPAT2P1-201ENST00000444924 1672 ntBASIC19.68■□□□□ 0.74
KRT3P12035 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
KRT3P12035 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
KRT3P12035 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC19.68■□□□□ 0.74
KRT3P12035 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC19.68■□□□□ 0.74
KRT3P12035 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
KRT3P12035 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT3P12035 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT3P12035 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.67■□□□□ 0.74
KRT3P12035 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
KRT3P12035 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT3P12035 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
KRT3P12035 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT3P12035 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT3P12035 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT3P12035 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC19.67■□□□□ 0.74
KRT3P12035 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT3P12035 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT3P12035 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT3P12035 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT3P12035 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT3P12035 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
KRT3P12035 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.67■□□□□ 0.74
KRT3P12035 SLC25A1P2-201ENST00000430693 912 ntBASIC19.67■□□□□ 0.74
KRT3P12035 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT3P12035 AC093827.2-201ENST00000512654 315 ntBASIC19.67■□□□□ 0.74
KRT3P12035 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
KRT3P12035 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
KRT3P12035 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT3P12035 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.67■□□□□ 0.74
KRT3P12035 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT3P12035 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
KRT3P12035 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
KRT3P12035 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT3P12035 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT3P12035 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT3P12035 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT3P12035 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
KRT3P12035 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
KRT3P12035 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
KRT3P12035 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
KRT3P12035 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
KRT3P12035 AL499627.1-201ENST00000569373 2188 ntBASIC19.66■□□□□ 0.74
KRT3P12035 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.66■□□□□ 0.74
KRT3P12035 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
KRT3P12035 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
KRT3P12035 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
KRT3P12035 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
KRT3P12035 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.66■□□□□ 0.74
KRT3P12035 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.66■□□□□ 0.74
KRT3P12035 TSPY15P-201ENST00000457163 923 ntBASIC19.66■□□□□ 0.74
KRT3P12035 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
KRT3P12035 AC066615.1-201ENST00000640911 628 ntBASIC19.66■□□□□ 0.74
KRT3P12035 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.66■□□□□ 0.74
KRT3P12035 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC19.66■□□□□ 0.74
KRT3P12035 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
KRT3P12035 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
KRT3P12035 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
KRT3P12035 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
KRT3P12035 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC19.66■□□□□ 0.74
KRT3P12035 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
KRT3P12035 AC009113.1-201ENST00000570267 2443 ntBASIC19.66■□□□□ 0.74
KRT3P12035 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.66■□□□□ 0.74
KRT3P12035 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.66■□□□□ 0.74
KRT3P12035 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
KRT3P12035 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms