Protein–RNA interactions for Protein: Q9Y5G9

PCDHGA4, Protocadherin gamma-A4, humanhuman

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4Q9Y5G9 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHGA4Q9Y5G9 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHGA4Q9Y5G9 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHGA4Q9Y5G9 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.47■□□□□ 0.55
PCDHGA4Q9Y5G9 PRR31-201ENST00000371629 978 ntTSL 2 BASIC18.47■□□□□ 0.55
PCDHGA4Q9Y5G9 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
PCDHGA4Q9Y5G9 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
PCDHGA4Q9Y5G9 UPK3BP1-201ENST00000428678 509 ntBASIC18.47■□□□□ 0.55
PCDHGA4Q9Y5G9 B3GAT3P1-201ENST00000471720 806 ntBASIC18.47■□□□□ 0.55
PCDHGA4Q9Y5G9 AC022616.7-201ENST00000525383 220 ntBASIC18.47■□□□□ 0.55
PCDHGA4Q9Y5G9 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.47■□□□□ 0.55
PCDHGA4Q9Y5G9 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.47■□□□□ 0.55
PCDHGA4Q9Y5G9 AC131212.4-201ENST00000623606 975 ntBASIC18.47■□□□□ 0.55
PCDHGA4Q9Y5G9 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHGA4Q9Y5G9 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHGA4Q9Y5G9 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHGA4Q9Y5G9 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.47■□□□□ 0.55
PCDHGA4Q9Y5G9 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHGA4Q9Y5G9 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
PCDHGA4Q9Y5G9 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
PCDHGA4Q9Y5G9 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHGA4Q9Y5G9 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
PCDHGA4Q9Y5G9 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC18.46■□□□□ 0.55
PCDHGA4Q9Y5G9 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
PCDHGA4Q9Y5G9 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHGA4Q9Y5G9 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHGA4Q9Y5G9 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.46■□□□□ 0.55
PCDHGA4Q9Y5G9 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
PCDHGA4Q9Y5G9 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
PCDHGA4Q9Y5G9 SDHAP1-207ENST00000440850 2000 ntBASIC18.46■□□□□ 0.55
PCDHGA4Q9Y5G9 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHGA4Q9Y5G9 GUK1-204ENST00000366721 689 ntTSL 3 BASIC18.46■□□□□ 0.55
PCDHGA4Q9Y5G9 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC18.46■□□□□ 0.55
PCDHGA4Q9Y5G9 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHGA4Q9Y5G9 AK4P3-201ENST00000418260 669 ntBASIC18.46■□□□□ 0.55
PCDHGA4Q9Y5G9 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.46■□□□□ 0.55
PCDHGA4Q9Y5G9 AC128688.1-201ENST00000487626 519 ntBASIC18.46■□□□□ 0.55
PCDHGA4Q9Y5G9 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHGA4Q9Y5G9 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC18.46■□□□□ 0.55
PCDHGA4Q9Y5G9 LINC01238-205ENST00000567549 1107 ntBASIC18.46■□□□□ 0.55
PCDHGA4Q9Y5G9 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
PCDHGA4Q9Y5G9 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
PCDHGA4Q9Y5G9 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHGA4Q9Y5G9 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
PCDHGA4Q9Y5G9 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.46■□□□□ 0.55
PCDHGA4Q9Y5G9 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
PCDHGA4Q9Y5G9 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.46■□□□□ 0.55
PCDHGA4Q9Y5G9 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHGA4Q9Y5G9 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
PCDHGA4Q9Y5G9 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
PCDHGA4Q9Y5G9 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 CRYGFP-201ENST00000418459 633 ntBASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 BX664615.1-201ENST00000443558 458 ntBASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 Z85996.1-201ENST00000494644 937 ntBASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 AC091076.1-201ENST00000610741 619 ntBASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 AL358472.4-201ENST00000633140 710 ntBASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
PCDHGA4Q9Y5G9 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.44■□□□□ 0.54
PCDHGA4Q9Y5G9 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
PCDHGA4Q9Y5G9 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PCDHGA4Q9Y5G9 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.44■□□□□ 0.54
PCDHGA4Q9Y5G9 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
PCDHGA4Q9Y5G9 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PCDHGA4Q9Y5G9 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
PCDHGA4Q9Y5G9 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PCDHGA4Q9Y5G9 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms