Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
DDX28Q9NUL7 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
DDX28Q9NUL7 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
DDX28Q9NUL7 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.16■□□□□ 0.34
DDX28Q9NUL7 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
DDX28Q9NUL7 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC17.16■□□□□ 0.34
DDX28Q9NUL7 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
DDX28Q9NUL7 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
DDX28Q9NUL7 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
DDX28Q9NUL7 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
DDX28Q9NUL7 TNRC18P3-201ENST00000441896 2691 ntBASIC17.15■□□□□ 0.34
DDX28Q9NUL7 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
DDX28Q9NUL7 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
DDX28Q9NUL7 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.15■□□□□ 0.34
DDX28Q9NUL7 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.15■□□□□ 0.34
DDX28Q9NUL7 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC17.15■□□□□ 0.34
DDX28Q9NUL7 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
DDX28Q9NUL7 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC17.15■□□□□ 0.34
DDX28Q9NUL7 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC17.15■□□□□ 0.34
DDX28Q9NUL7 AC098934.4-201ENST00000564127 592 ntBASIC17.15■□□□□ 0.34
DDX28Q9NUL7 AC083880.1-201ENST00000608266 535 ntBASIC17.15■□□□□ 0.34
DDX28Q9NUL7 AC006557.6-201ENST00000623071 864 ntBASIC17.15■□□□□ 0.34
DDX28Q9NUL7 AC066615.1-201ENST00000640911 628 ntBASIC17.15■□□□□ 0.34
DDX28Q9NUL7 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
DDX28Q9NUL7 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
DDX28Q9NUL7 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC17.15■□□□□ 0.34
DDX28Q9NUL7 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
DDX28Q9NUL7 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.15■□□□□ 0.34
DDX28Q9NUL7 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
DDX28Q9NUL7 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
DDX28Q9NUL7 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
DDX28Q9NUL7 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 PNMA6B-201ENST00000538162 1200 ntBASIC17.14■□□□□ 0.33
DDX28Q9NUL7 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
DDX28Q9NUL7 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
DDX28Q9NUL7 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
DDX28Q9NUL7 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
DDX28Q9NUL7 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
DDX28Q9NUL7 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
DDX28Q9NUL7 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.13■□□□□ 0.33
DDX28Q9NUL7 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
DDX28Q9NUL7 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
DDX28Q9NUL7 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
DDX28Q9NUL7 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
DDX28Q9NUL7 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
DDX28Q9NUL7 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
DDX28Q9NUL7 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
DDX28Q9NUL7 RPS2P52-201ENST00000469610 820 ntBASIC17.13■□□□□ 0.33
DDX28Q9NUL7 SLC29A4P2-201ENST00000504749 1089 ntBASIC17.13■□□□□ 0.33
DDX28Q9NUL7 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC17.13■□□□□ 0.33
DDX28Q9NUL7 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
DDX28Q9NUL7 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
DDX28Q9NUL7 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.13■□□□□ 0.33
DDX28Q9NUL7 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.13■□□□□ 0.33
DDX28Q9NUL7 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
DDX28Q9NUL7 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
DDX28Q9NUL7 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
DDX28Q9NUL7 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
DDX28Q9NUL7 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
DDX28Q9NUL7 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
DDX28Q9NUL7 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
DDX28Q9NUL7 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
DDX28Q9NUL7 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
DDX28Q9NUL7 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC17.13■□□□□ 0.33
DDX28Q9NUL7 AL139384.1-201ENST00000612143 3047 ntBASIC17.13■□□□□ 0.33
DDX28Q9NUL7 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms