Protein–RNA interactions for Protein: Q96PY6

NEK1, Serine/threonine-protein kinase Nek1, humanhuman

Predictions only

Length 1,258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1Q96PY6 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
NEK1Q96PY6 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC22.2■■□□□ 1.14
NEK1Q96PY6 MIR1238-201ENST00000408483 83 ntBASIC22.2■■□□□ 1.14
NEK1Q96PY6 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
NEK1Q96PY6 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
NEK1Q96PY6 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
NEK1Q96PY6 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
NEK1Q96PY6 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC22.2■■□□□ 1.14
NEK1Q96PY6 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC22.2■■□□□ 1.14
NEK1Q96PY6 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
NEK1Q96PY6 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
NEK1Q96PY6 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
NEK1Q96PY6 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
NEK1Q96PY6 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC22.2■■□□□ 1.14
NEK1Q96PY6 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
NEK1Q96PY6 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
NEK1Q96PY6 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
NEK1Q96PY6 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC22.19■■□□□ 1.14
NEK1Q96PY6 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC22.19■■□□□ 1.14
NEK1Q96PY6 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
NEK1Q96PY6 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
NEK1Q96PY6 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC22.19■■□□□ 1.14
NEK1Q96PY6 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC22.19■■□□□ 1.14
NEK1Q96PY6 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC22.19■■□□□ 1.14
NEK1Q96PY6 AL023803.3-201ENST00000615559 522 ntBASIC22.19■■□□□ 1.14
NEK1Q96PY6 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
NEK1Q96PY6 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
NEK1Q96PY6 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
NEK1Q96PY6 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
NEK1Q96PY6 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
NEK1Q96PY6 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
NEK1Q96PY6 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
NEK1Q96PY6 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC22.18■■□□□ 1.14
NEK1Q96PY6 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC22.18■■□□□ 1.14
NEK1Q96PY6 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
NEK1Q96PY6 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
NEK1Q96PY6 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
NEK1Q96PY6 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
NEK1Q96PY6 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
NEK1Q96PY6 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC22.18■■□□□ 1.14
NEK1Q96PY6 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC22.18■■□□□ 1.14
NEK1Q96PY6 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
NEK1Q96PY6 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
NEK1Q96PY6 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
NEK1Q96PY6 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
NEK1Q96PY6 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC22.17■■□□□ 1.14
NEK1Q96PY6 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
NEK1Q96PY6 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
NEK1Q96PY6 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
NEK1Q96PY6 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
NEK1Q96PY6 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
NEK1Q96PY6 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
NEK1Q96PY6 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
NEK1Q96PY6 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
NEK1Q96PY6 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
NEK1Q96PY6 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
NEK1Q96PY6 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC22.17■■□□□ 1.14
NEK1Q96PY6 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC22.17■■□□□ 1.14
NEK1Q96PY6 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC22.17■■□□□ 1.14
NEK1Q96PY6 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
NEK1Q96PY6 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
NEK1Q96PY6 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
NEK1Q96PY6 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
NEK1Q96PY6 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC22.17■■□□□ 1.14
NEK1Q96PY6 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
NEK1Q96PY6 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
NEK1Q96PY6 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
NEK1Q96PY6 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
NEK1Q96PY6 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC22.17■■□□□ 1.14
NEK1Q96PY6 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
NEK1Q96PY6 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
NEK1Q96PY6 AC126763.1-201ENST00000552015 2118 ntBASIC22.16■■□□□ 1.14
NEK1Q96PY6 AC090164.3-201ENST00000610780 2143 ntBASIC22.16■■□□□ 1.14
NEK1Q96PY6 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC22.16■■□□□ 1.14
NEK1Q96PY6 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
NEK1Q96PY6 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
NEK1Q96PY6 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC22.16■■□□□ 1.14
NEK1Q96PY6 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC22.16■■□□□ 1.14
NEK1Q96PY6 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
NEK1Q96PY6 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
NEK1Q96PY6 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC22.16■■□□□ 1.14
NEK1Q96PY6 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
NEK1Q96PY6 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
NEK1Q96PY6 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
NEK1Q96PY6 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
NEK1Q96PY6 ENSA-205ENST00000361532 792 ntTSL 2 BASIC22.16■■□□□ 1.14
NEK1Q96PY6 HIST1H2APS4-201ENST00000362070 348 ntBASIC22.16■■□□□ 1.14
NEK1Q96PY6 SLC25A1P2-201ENST00000430693 912 ntBASIC22.16■■□□□ 1.14
NEK1Q96PY6 MCCD1P1-208ENST00000445732 328 ntBASIC22.16■■□□□ 1.14
NEK1Q96PY6 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC22.16■■□□□ 1.14
NEK1Q96PY6 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
NEK1Q96PY6 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC22.16■■□□□ 1.14
NEK1Q96PY6 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
NEK1Q96PY6 MIR4674-201ENST00000582457 87 ntBASIC22.16■■□□□ 1.14
NEK1Q96PY6 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
NEK1Q96PY6 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
NEK1Q96PY6 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC22.16■■□□□ 1.14
NEK1Q96PY6 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC22.16■■□□□ 1.14
NEK1Q96PY6 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
NEK1Q96PY6 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC22.16■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms