Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 AC133552.2-201ENST00000619106 1032 ntBASIC25.19■■□□□ 1.62
CFAP54Q96N23 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC25.18■■□□□ 1.62
CFAP54Q96N23 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CFAP54Q96N23 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC25.18■■□□□ 1.62
CFAP54Q96N23 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
CFAP54Q96N23 AC103724.3-201ENST00000564481 992 ntBASIC25.18■■□□□ 1.62
CFAP54Q96N23 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC25.16■■□□□ 1.62
CFAP54Q96N23 YBX1P4-201ENST00000392794 808 ntBASIC25.16■■□□□ 1.62
CFAP54Q96N23 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CFAP54Q96N23 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC25.15■■□□□ 1.62
CFAP54Q96N23 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC25.15■■□□□ 1.62
CFAP54Q96N23 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
CFAP54Q96N23 AC239859.2-201ENST00000444165 318 ntBASIC25.14■■□□□ 1.61
CFAP54Q96N23 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC25.13■■□□□ 1.61
CFAP54Q96N23 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC25.13■■□□□ 1.61
CFAP54Q96N23 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CFAP54Q96N23 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC25.13■■□□□ 1.61
CFAP54Q96N23 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC25.13■■□□□ 1.61
CFAP54Q96N23 MIR6765-201ENST00000614092 87 ntBASIC25.13■■□□□ 1.61
CFAP54Q96N23 MOB2-207ENST00000614710 705 ntTSL 5 BASIC25.12■■□□□ 1.61
CFAP54Q96N23 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CFAP54Q96N23 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CFAP54Q96N23 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC25.11■■□□□ 1.61
CFAP54Q96N23 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC25.11■■□□□ 1.61
CFAP54Q96N23 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CFAP54Q96N23 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
CFAP54Q96N23 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
CFAP54Q96N23 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CFAP54Q96N23 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC25.1■■□□□ 1.61
CFAP54Q96N23 SMPD5-203ENST00000639008 1464 ntBASIC25.1■■□□□ 1.61
CFAP54Q96N23 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CFAP54Q96N23 PRTG-204ENST00000561292 833 ntTSL 3 BASIC25.09■■□□□ 1.61
CFAP54Q96N23 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
CFAP54Q96N23 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC25.09■■□□□ 1.61
CFAP54Q96N23 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC25.09■■□□□ 1.61
CFAP54Q96N23 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
CFAP54Q96N23 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC25.09■■□□□ 1.61
CFAP54Q96N23 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CFAP54Q96N23 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC25.08■■□□□ 1.61
CFAP54Q96N23 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC25.08■■□□□ 1.61
CFAP54Q96N23 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
CFAP54Q96N23 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC25.08■■□□□ 1.61
CFAP54Q96N23 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC25.08■■□□□ 1.61
CFAP54Q96N23 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC25.08■■□□□ 1.6
CFAP54Q96N23 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC25.08■■□□□ 1.6
CFAP54Q96N23 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
CFAP54Q96N23 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC25.08■■□□□ 1.6
CFAP54Q96N23 MIR4508-201ENST00000584178 70 ntBASIC25.08■■□□□ 1.6
CFAP54Q96N23 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC25.07■■□□□ 1.6
CFAP54Q96N23 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CFAP54Q96N23 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
CFAP54Q96N23 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC25.06■■□□□ 1.6
CFAP54Q96N23 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CFAP54Q96N23 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CFAP54Q96N23 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC25.06■■□□□ 1.6
CFAP54Q96N23 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC25.06■■□□□ 1.6
CFAP54Q96N23 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC25.05■■□□□ 1.6
CFAP54Q96N23 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC25.05■■□□□ 1.6
CFAP54Q96N23 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CFAP54Q96N23 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC25.04■■□□□ 1.6
CFAP54Q96N23 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CFAP54Q96N23 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CFAP54Q96N23 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
CFAP54Q96N23 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
CFAP54Q96N23 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
CFAP54Q96N23 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC25.03■■□□□ 1.6
CFAP54Q96N23 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC25.03■■□□□ 1.6
CFAP54Q96N23 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC25.03■■□□□ 1.6
CFAP54Q96N23 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
CFAP54Q96N23 AC074183.2-201ENST00000623112 922 ntBASIC25.03■■□□□ 1.6
CFAP54Q96N23 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC25.03■■□□□ 1.6
CFAP54Q96N23 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC25.03■■□□□ 1.6
CFAP54Q96N23 RPS2-210ENST00000530225 765 ntTSL 2 BASIC25.02■■□□□ 1.6
CFAP54Q96N23 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CFAP54Q96N23 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CFAP54Q96N23 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC25.01■■□□□ 1.6
CFAP54Q96N23 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC25.01■■□□□ 1.6
CFAP54Q96N23 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC25.01■■□□□ 1.59
CFAP54Q96N23 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CFAP54Q96N23 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC25.01■■□□□ 1.59
CFAP54Q96N23 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC25■■□□□ 1.59
CFAP54Q96N23 RARRES2P6-201ENST00000567333 442 ntBASIC25■■□□□ 1.59
CFAP54Q96N23 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
CFAP54Q96N23 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC25■■□□□ 1.59
CFAP54Q96N23 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CFAP54Q96N23 Z92544.1-202ENST00000571933 1220 ntBASIC25■■□□□ 1.59
CFAP54Q96N23 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
CFAP54Q96N23 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
CFAP54Q96N23 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
CFAP54Q96N23 AC026202.3-201ENST00000600805 1127 ntBASIC24.99■■□□□ 1.59
CFAP54Q96N23 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
CFAP54Q96N23 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
CFAP54Q96N23 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC24.98■■□□□ 1.59
CFAP54Q96N23 GRAMD4P7-201ENST00000578182 1232 ntBASIC24.98■■□□□ 1.59
CFAP54Q96N23 PVT1_1.1-201ENST00000615125 194 ntBASIC24.98■■□□□ 1.59
CFAP54Q96N23 AL139246.5-201ENST00000606645 996 ntBASIC24.98■■□□□ 1.59
CFAP54Q96N23 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
CFAP54Q96N23 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC24.97■■□□□ 1.59
CFAP54Q96N23 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC24.97■■□□□ 1.59
CFAP54Q96N23 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms