Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC30.06■■■□□ 2.4
NKX2-3Q8TAU0 TPT1-202ENST00000379055 948 ntTSL 2 BASIC30.06■■■□□ 2.4
NKX2-3Q8TAU0 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC30.06■■■□□ 2.4
NKX2-3Q8TAU0 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
NKX2-3Q8TAU0 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
NKX2-3Q8TAU0 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
NKX2-3Q8TAU0 CHST11-202ENST00000546689 756 ntTSL 2 BASIC30.05■■■□□ 2.4
NKX2-3Q8TAU0 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
NKX2-3Q8TAU0 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
NKX2-3Q8TAU0 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
NKX2-3Q8TAU0 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC30.04■■■□□ 2.4
NKX2-3Q8TAU0 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
NKX2-3Q8TAU0 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC30.04■■■□□ 2.4
NKX2-3Q8TAU0 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC30.04■■■□□ 2.4
NKX2-3Q8TAU0 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC30.04■■■□□ 2.4
NKX2-3Q8TAU0 AC012354.3-201ENST00000623734 483 ntBASIC30.04■■■□□ 2.4
NKX2-3Q8TAU0 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC30.04■■■□□ 2.4
NKX2-3Q8TAU0 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
NKX2-3Q8TAU0 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC30.03■■■□□ 2.4
NKX2-3Q8TAU0 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
NKX2-3Q8TAU0 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
NKX2-3Q8TAU0 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC30.03■■■□□ 2.4
NKX2-3Q8TAU0 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC30.03■■■□□ 2.4
NKX2-3Q8TAU0 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC30.02■■■□□ 2.4
NKX2-3Q8TAU0 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
NKX2-3Q8TAU0 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC30.02■■■□□ 2.4
NKX2-3Q8TAU0 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC30.01■■■□□ 2.4
NKX2-3Q8TAU0 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
NKX2-3Q8TAU0 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC30.01■■■□□ 2.39
NKX2-3Q8TAU0 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC30■■■□□ 2.39
NKX2-3Q8TAU0 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC30■■■□□ 2.39
NKX2-3Q8TAU0 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC30■■■□□ 2.39
NKX2-3Q8TAU0 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC30■■■□□ 2.39
NKX2-3Q8TAU0 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC30■■■□□ 2.39
NKX2-3Q8TAU0 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC30■■■□□ 2.39
NKX2-3Q8TAU0 NTF6A-201ENST00000591175 560 ntBASIC30■■■□□ 2.39
NKX2-3Q8TAU0 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC30■■■□□ 2.39
NKX2-3Q8TAU0 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
NKX2-3Q8TAU0 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
NKX2-3Q8TAU0 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC29.98■■■□□ 2.39
NKX2-3Q8TAU0 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
NKX2-3Q8TAU0 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
NKX2-3Q8TAU0 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC29.97■■■□□ 2.39
NKX2-3Q8TAU0 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
NKX2-3Q8TAU0 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
NKX2-3Q8TAU0 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC29.96■■■□□ 2.39
NKX2-3Q8TAU0 CEP120-209ENST00000515110 606 ntTSL 3 BASIC29.94■■■□□ 2.38
NKX2-3Q8TAU0 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
NKX2-3Q8TAU0 AP002414.2-202ENST00000590929 1450 ntBASIC29.93■■■□□ 2.38
NKX2-3Q8TAU0 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC29.93■■■□□ 2.38
NKX2-3Q8TAU0 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC29.93■■■□□ 2.38
NKX2-3Q8TAU0 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC29.93■■■□□ 2.38
NKX2-3Q8TAU0 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC29.92■■■□□ 2.38
NKX2-3Q8TAU0 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC29.92■■■□□ 2.38
NKX2-3Q8TAU0 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC29.92■■■□□ 2.38
NKX2-3Q8TAU0 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
NKX2-3Q8TAU0 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
NKX2-3Q8TAU0 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
NKX2-3Q8TAU0 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC29.89■■■□□ 2.38
NKX2-3Q8TAU0 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC29.89■■■□□ 2.38
NKX2-3Q8TAU0 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC29.88■■■□□ 2.37
NKX2-3Q8TAU0 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
NKX2-3Q8TAU0 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC29.88■■■□□ 2.37
NKX2-3Q8TAU0 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC29.88■■■□□ 2.37
NKX2-3Q8TAU0 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
NKX2-3Q8TAU0 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
NKX2-3Q8TAU0 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC29.87■■■□□ 2.37
NKX2-3Q8TAU0 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
NKX2-3Q8TAU0 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
NKX2-3Q8TAU0 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
NKX2-3Q8TAU0 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
NKX2-3Q8TAU0 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
NKX2-3Q8TAU0 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC29.85■■■□□ 2.37
NKX2-3Q8TAU0 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
NKX2-3Q8TAU0 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC29.85■■■□□ 2.37
NKX2-3Q8TAU0 HES4-202ENST00000428771 1040 ntTSL 2 BASIC29.85■■■□□ 2.37
NKX2-3Q8TAU0 RPS2-210ENST00000530225 765 ntTSL 2 BASIC29.85■■■□□ 2.37
NKX2-3Q8TAU0 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC29.85■■■□□ 2.37
NKX2-3Q8TAU0 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
NKX2-3Q8TAU0 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
NKX2-3Q8TAU0 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC29.84■■■□□ 2.37
NKX2-3Q8TAU0 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC29.84■■■□□ 2.37
NKX2-3Q8TAU0 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC29.84■■■□□ 2.37
NKX2-3Q8TAU0 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC29.84■■■□□ 2.37
NKX2-3Q8TAU0 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC29.84■■■□□ 2.37
NKX2-3Q8TAU0 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC29.84■■■□□ 2.37
NKX2-3Q8TAU0 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
NKX2-3Q8TAU0 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC29.84■■■□□ 2.37
NKX2-3Q8TAU0 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC29.83■■■□□ 2.37
NKX2-3Q8TAU0 PROC-203ENST00000409048 1586 ntTSL 5 BASIC29.83■■■□□ 2.37
NKX2-3Q8TAU0 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
NKX2-3Q8TAU0 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
NKX2-3Q8TAU0 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
NKX2-3Q8TAU0 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC29.83■■■□□ 2.37
NKX2-3Q8TAU0 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC29.83■■■□□ 2.37
NKX2-3Q8TAU0 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC29.82■■■□□ 2.36
NKX2-3Q8TAU0 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC29.82■■■□□ 2.36
NKX2-3Q8TAU0 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC29.82■■■□□ 2.36
NKX2-3Q8TAU0 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
NKX2-3Q8TAU0 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC29.82■■■□□ 2.36
Retrieved 100 of 98,524 protein–RNA pairs in 119 ms