Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 NMRAL1-207ENST00000572391 639 ntTSL 321.27■■□□□ 11e-6■■■■■ 32
DDX55Q8NHQ9 NMRAL1-209ENST00000573520 787 ntTSL 321.06■□□□□ 0.961e-6■■■■■ 32
DDX55Q8NHQ9 NMRAL1-214ENST00000575002 562 ntTSL 420.05■□□□□ 0.81e-6■■■■■ 32
DDX55Q8NHQ9 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.751e-6■■■■■ 32
DDX55Q8NHQ9 SLC35C2-208ENST00000481809 872 ntTSL 518.94■□□□□ 0.621e-6■■■■■ 32
DDX55Q8NHQ9 SLC35C2-210ENST00000484318 971 ntTSL 518.45■□□□□ 0.541e-6■■■■■ 32
DDX55Q8NHQ9 IRF3-211ENST00000596644 550 ntTSL 218.11■□□□□ 0.491e-6■■■■■ 32
DDX55Q8NHQ9 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC17.7■□□□□ 0.421e-6■■■■■ 32
DDX55Q8NHQ9 IRF3-224ENST00000599680 472 ntTSL 317.58■□□□□ 0.41e-6■■■■■ 32
DDX55Q8NHQ9 SLC35C2-206ENST00000424568 731 ntTSL 217.1■□□□□ 0.331e-6■■■■■ 32
DDX55Q8NHQ9 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.221e-6■■■■■ 32
DDX55Q8NHQ9 NMRAL1-211ENST00000573571 731 ntTSL 316.09■□□□□ 0.171e-6■■■■■ 32
DDX55Q8NHQ9 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.091e-6■■■■■ 32
DDX55Q8NHQ9 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC15.23■□□□□ 0.031e-6■■■■■ 32
DDX55Q8NHQ9 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.11e-6■■■■■ 32
DDX55Q8NHQ9 NMRAL1-217ENST00000576176 672 ntTSL 214□□□□□ -0.171e-6■■■■■ 32
DDX55Q8NHQ9 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.851e-9■■■■■ 31.9
DDX55Q8NHQ9 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.711e-9■■■■■ 31.9
DDX55Q8NHQ9 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.4□□□□□ -1.871e-9■■■■■ 31.9
DDX55Q8NHQ9 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC28.54■■■□□ 2.165e-7■■■■■ 31.7
DDX55Q8NHQ9 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC28.54■■■□□ 2.165e-7■■■■■ 31.7
DDX55Q8NHQ9 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC24.47■■□□□ 1.515e-7■■■■■ 31.7
DDX55Q8NHQ9 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.495e-7■■■■■ 31.7
DDX55Q8NHQ9 NOC2L-205ENST00000487214 865 ntTSL 323.64■■□□□ 1.375e-7■■■■■ 31.7
DDX55Q8NHQ9 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.315e-7■■■■■ 31.7
DDX55Q8NHQ9 DNAJC4-208ENST00000540945 703 ntTSL 223.01■■□□□ 1.272e-9■■■■■ 31.7
DDX55Q8NHQ9 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC21.2■□□□□ 0.985e-7■■■■■ 31.7
DDX55Q8NHQ9 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC20.81■□□□□ 0.925e-7■■■■■ 31.7
DDX55Q8NHQ9 SMIM1-202ENST00000452264 447 ntTSL 220.43■□□□□ 0.865e-7■■■■■ 31.7
DDX55Q8NHQ9 ITIH1-206ENST00000482836 832 ntTSL 319.85■□□□□ 0.775e-7■■■■■ 31.7
DDX55Q8NHQ9 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC18.72■□□□□ 0.595e-7■■■■■ 31.7
DDX55Q8NHQ9 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC17.71■□□□□ 0.435e-7■■■■■ 31.7
DDX55Q8NHQ9 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.435e-7■■■■■ 31.7
DDX55Q8NHQ9 PSMB6-202ENST00000571309 583 ntTSL 317.18■□□□□ 0.345e-7■■■■■ 31.7
DDX55Q8NHQ9 DNAJC4-204ENST00000535246 502 ntTSL 317.12■□□□□ 0.335e-7■■■■■ 31.7
DDX55Q8NHQ9 PSMB6-204ENST00000575643 666 ntTSL 216.47■□□□□ 0.235e-7■■■■■ 31.7
DDX55Q8NHQ9 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.145e-7■■■■■ 31.7
DDX55Q8NHQ9 AXIN2-209ENST00000618960 4060 ntTSL 5 BASIC14.73□□□□□ -0.055e-7■■■■■ 31.7
DDX55Q8NHQ9 ITIH1-203ENST00000428133 1517 ntTSL 514.22□□□□□ -0.135e-7■■■■■ 31.7
DDX55Q8NHQ9 ETS2-201ENST00000360214 3936 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.185e-7■■■■■ 31.7
DDX55Q8NHQ9 ITIH1-211ENST00000537050 2493 ntTSL 2 BASIC13.06□□□□□ -0.325e-7■■■■■ 31.7
DDX55Q8NHQ9 ITIH1-212ENST00000628722 2691 ntTSL 212.46□□□□□ -0.415e-7■■■■■ 31.7
DDX55Q8NHQ9 ITIH1-201ENST00000273283 2911 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.55e-7■■■■■ 31.7
DDX55Q8NHQ9 ETS2-202ENST00000360938 3766 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.525e-7■■■■■ 31.7
DDX55Q8NHQ9 ITIH1-207ENST00000484844 414 ntTSL 59.21□□□□□ -0.945e-7■■■■■ 31.7
DDX55Q8NHQ9 CNOT1-222ENST00000570139 458 ntTSL 27.9□□□□□ -1.145e-7■■■■■ 31.7
DDX55Q8NHQ9 CEP250-214ENST00000621352 607 ntTSL 36.64□□□□□ -1.355e-7■■■■■ 31.7
DDX55Q8NHQ9 CSE1L-202ENST00000396192 3459 ntTSL 5 BASIC12.6□□□□□ -0.393e-7■■■■■ 31.2
DDX55Q8NHQ9 WDR82-201ENST00000296490 4293 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.442e-13■■■■■ 31.2
DDX55Q8NHQ9 CSE1L-201ENST00000262982 3553 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.453e-7■■■■■ 31.2
DDX55Q8NHQ9 CSE1L-203ENST00000469700 1401 ntTSL 1 (best)5.8□□□□□ -1.483e-7■■■■■ 31.2
DDX55Q8NHQ9 TUBA1B-202ENST00000336023 1627 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.186e-16■■■■■ 31
DDX55Q8NHQ9 TUBA1B-201ENST00000332858 3198 ntTSL 1 (best)14.12□□□□□ -0.156e-16■■■■■ 31
DDX55Q8NHQ9 TUBA1B-204ENST00000547765 1875 ntTSL 513.84□□□□□ -0.196e-16■■■■■ 31
DDX55Q8NHQ9 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.242e-12■■■■■ 31
DDX55Q8NHQ9 CUL7-201ENST00000265348 5254 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.392e-12■■■■■ 31
DDX55Q8NHQ9 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.911e-18■■■■■ 31
DDX55Q8NHQ9 RCN1-207ENST00000531345 2653 ntTSL 28.19□□□□□ -1.11e-18■■■■■ 31
DDX55Q8NHQ9 RCN1-211ENST00000533898 2416 ntTSL 24.89□□□□□ -1.631e-18■■■■■ 31
DDX55Q8NHQ9 RCN1-204ENST00000528630 549 ntTSL 33.32□□□□□ -1.881e-18■■■■■ 31
DDX55Q8NHQ9 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.591e-12■■■■■ 30.6
DDX55Q8NHQ9 BCAR1-212ENST00000563038 2692 ntTSL 1 (best)17.92■□□□□ 0.461e-12■■■■■ 30.6
DDX55Q8NHQ9 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.85■□□□□ 0.291e-12■■■■■ 30.6
DDX55Q8NHQ9 BCAR1-218ENST00000566982 3024 ntTSL 216.7■□□□□ 0.261e-12■■■■■ 30.6
DDX55Q8NHQ9 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.151e-12■■■■■ 30.6
DDX55Q8NHQ9 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.131e-12■■■■■ 30.6
DDX55Q8NHQ9 BCAR1-211ENST00000562556 4659 ntTSL 214.6□□□□□ -0.071e-12■■■■■ 30.6
DDX55Q8NHQ9 BCAR1-203ENST00000393422 4064 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.331e-12■■■■■ 30.6
DDX55Q8NHQ9 SUPT4H1-206ENST00000581204 539 ntTSL 29.96□□□□□ -0.823e-10■■■■■ 30.6
DDX55Q8NHQ9 SUPT4H1-207ENST00000581540 668 ntTSL 2 BASIC8.66□□□□□ -1.023e-10■■■■■ 30.6
DDX55Q8NHQ9 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.26■□□□□ 0.837e-24■■■■■ 30.5
DDX55Q8NHQ9 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.327e-24■■■■■ 30.5
DDX55Q8NHQ9 SPP1-203ENST00000395080 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.112e-11■■■■■ 30.4
DDX55Q8NHQ9 SPP1-211ENST00000614857 1558 ntTSL 2 BASIC12.01□□□□□ -0.492e-11■■■■■ 30.4
DDX55Q8NHQ9 SPP1-201ENST00000237623 1581 ntAPPRIS P3 TSL 1 (best) BASIC9.83□□□□□ -0.842e-11■■■■■ 30.4
DDX55Q8NHQ9 SPP1-209ENST00000509659 1664 ntTSL 1 (best)7.76□□□□□ -1.172e-11■■■■■ 30.4
DDX55Q8NHQ9 FAM171A1-201ENST00000378116 3952 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.821e-7■■■■■ 30.4
DDX55Q8NHQ9 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.56e-12■■■■■ 30.4
DDX55Q8NHQ9 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC23.49■■□□□ 1.356e-12■■■■■ 30.4
DDX55Q8NHQ9 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC22.81■■□□□ 1.246e-12■■■■■ 30.4
DDX55Q8NHQ9 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC19.63■□□□□ 0.736e-12■■■■■ 30.4
DDX55Q8NHQ9 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC18.64■□□□□ 0.576e-12■■■■■ 30.4
DDX55Q8NHQ9 TMEM258-205ENST00000540434 553 ntTSL 214.01□□□□□ -0.172e-6■■■■■ 30.3
DDX55Q8NHQ9 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.551e-9■■■■■ 30.3
DDX55Q8NHQ9 QSOX1-202ENST00000367602 9311 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.171e-9■■■■■ 30.3
DDX55Q8NHQ9 S100A1-202ENST00000368696 522 ntTSL 1 (best) BASIC7.81□□□□□ -1.161e-24■■■■■ 30.3
DDX55Q8NHQ9 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC24.8■■□□□ 1.563e-9■■■■■ 30.2
DDX55Q8NHQ9 PTMS-205ENST00000540828 644 ntTSL 1 (best)25.96■■□□□ 1.751e-14■■■■■ 30.2
DDX55Q8NHQ9 PCGF2-202ENST00000611883 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.127e-10■■■■■ 30.2
DDX55Q8NHQ9 MT1G-203ENST00000568675 628 ntTSL 1 (best) BASIC16.29■□□□□ 0.21e-6■■■■■ 30
DDX55Q8NHQ9 MT1G-204ENST00000569500 305 ntTSL 3 BASIC15.16■□□□□ 0.021e-6■■■■■ 30
DDX55Q8NHQ9 MT1G-201ENST00000379811 405 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.31e-6■■■■■ 30
DDX55Q8NHQ9 MT1G-202ENST00000444837 406 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.651e-6■■■■■ 30
DDX55Q8NHQ9 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.272e-6■■■■■ 29.8
DDX55Q8NHQ9 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.142e-6■■■■■ 29.8
DDX55Q8NHQ9 PFDN2-202ENST00000468311 408 ntTSL 228.21■■■□□ 2.112e-6■■■■■ 29.8
DDX55Q8NHQ9 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.412e-6■■■■■ 29.8
DDX55Q8NHQ9 ANKRD13D-208ENST00000507915 1165 ntTSL 323.19■■□□□ 1.32e-6■■■■■ 29.8
DDX55Q8NHQ9 CSTB-202ENST00000480147 2344 nt22.96■■□□□ 1.272e-6■■■■■ 29.8
DDX55Q8NHQ9 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC22.3■■□□□ 1.162e-6■■■■■ 29.8
Retrieved 100 of 15,504 protein–RNA pairs in 365.6 ms