RNA–Protein interactions for RNA: ENST00000570139.1

CNOT1-222, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 2

Gene CNOT1, Length 458 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-222ENST00000570139 AEBP2Q6ZN18 517 aaPredicted RBP24.4■■□□□ 1.5
CNOT1-222ENST00000570139 CHIC1Q5VXU3 224 aa23.37■■□□□ 1.33
CNOT1-222ENST00000570139 SENP3Q9H4L4 574 aaPredicted RBP21.03■□□□□ 0.96
CNOT1-222ENST00000570139 PHF23Q9BUL5 403 aaPredicted RBP20.59■□□□□ 0.89
CNOT1-222ENST00000570139 POTEDQ86YR6 584 aa19.98■□□□□ 0.79
CNOT1-222ENST00000570139 FOXD1Q16676 465 aa19.67■□□□□ 0.74
CNOT1-222ENST00000570139 PLPPR3Q6T4P5 718 aa19.47■□□□□ 0.71
CNOT1-222ENST00000570139 MSH5O43196 834 aa18.84■□□□□ 0.61
CNOT1-222ENST00000570139 PIAS4Q8N2W9 510 aaPredicted RBP18.16■□□□□ 0.5
CNOT1-222ENST00000570139 ADRA2BP18089 450 aa18.05■□□□□ 0.48
CNOT1-222ENST00000570139 KCNA4P22459 653 aa17.91■□□□□ 0.46
CNOT1-222ENST00000570139 EHMT2Q96KQ7 1210 aa17.9■□□□□ 0.46
CNOT1-222ENST00000570139 PPP6R1Q9UPN7 881 aa17.81■□□□□ 0.44
CNOT1-222ENST00000570139 SLC4A1APQ9BWU0 796 aaKnown RBP17.29■□□□□ 0.36
CNOT1-222ENST00000570139 PPP4R3CPQ6ZMV5 832 aa17.22■□□□□ 0.35
CNOT1-222ENST00000570139 CSRNP3Q8WYN3 585 aa17.21■□□□□ 0.35
CNOT1-222ENST00000570139 NCBP3Q53F19 620 aaKnown RBP17.16■□□□□ 0.34
CNOT1-222ENST00000570139 NPM3O75607 178 aaKnown RBP16.8■□□□□ 0.28
CNOT1-222ENST00000570139 CACNB1Q02641 598 aaPredicted RBP16.73■□□□□ 0.27
CNOT1-222ENST00000570139 CNKSR2Q8WXI2 1034 aa16.57■□□□□ 0.24
CNOT1-222ENST00000570139 SCAF1Q9H7N4 1312 aaKnown RBP16.51■□□□□ 0.23
CNOT1-222ENST00000570139 DMRT2Q9Y5R5 561 aa16.5■□□□□ 0.23
CNOT1-222ENST00000570139 ZBTB22O15209 634 aa16.46■□□□□ 0.23
CNOT1-222ENST00000570139 MAPK8IP2Q13387 824 aaPredicted RBP16.38■□□□□ 0.21
CNOT1-222ENST00000570139 FOXD4L1Q9NU39 408 aa16.28■□□□□ 0.2
CNOT1-222ENST00000570139 DNAJC5BQ9UF47 199 aa16.25■□□□□ 0.19
CNOT1-222ENST00000570139 SLC24A1O60721 1099 aa16.01■□□□□ 0.15
CNOT1-222ENST00000570139 RNF216Q9NWF9 866 aaPredicted RBP16■□□□□ 0.15
CNOT1-222ENST00000570139 AMER1Q5JTC6 1135 aaPredicted RBP15.98■□□□□ 0.15
CNOT1-222ENST00000570139 RNF39Q9H2S5 420 aa15.95■□□□□ 0.14
CNOT1-222ENST00000570139 DCAF8L1A6NGE4 600 aa15.86■□□□□ 0.13
CNOT1-222ENST00000570139 RTN4Q9NQC3 1192 aaKnown RBP15.86■□□□□ 0.13
CNOT1-222ENST00000570139 C1QBPQ07021 282 aaKnown RBP15.7■□□□□ 0.1
CNOT1-222ENST00000570139 ATXN8OSP0DMR3 200 aa15.66■□□□□ 0.1
CNOT1-222ENST00000570139 HOXD11P31277 338 aaPredicted RBP15.65■□□□□ 0.1
CNOT1-222ENST00000570139 NISCHQ9Y2I1 1504 aa15.61■□□□□ 0.09
CNOT1-222ENST00000570139 SLC4A2P04920 1241 aa15.59■□□□□ 0.09
CNOT1-222ENST00000570139 MYCNP04198 464 aaPredicted RBP15.57■□□□□ 0.08
CNOT1-222ENST00000570139 FKBP8Q14318 412 aa15.54■□□□□ 0.08
CNOT1-222ENST00000570139 POTEHQ6S545 545 aa15.48■□□□□ 0.07
CNOT1-222ENST00000570139 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.06■□□□□ 0
CNOT1-222ENST00000570139 HNRNPUL2Q1KMD3 747 aaKnown RBP15.06■□□□□ 0
CNOT1-222ENST00000570139 SAMD1Q6SPF0 538 aaPredicted RBP15.01□□□□□ -0.01
CNOT1-222ENST00000570139 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.94□□□□□ -0.02
CNOT1-222ENST00000570139 ATF5Q9Y2D1 282 aaPredicted RBP14.94□□□□□ -0.02
CNOT1-222ENST00000570139 FBXO3Q9UK99 471 aa14.83□□□□□ -0.04
CNOT1-222ENST00000570139 U3KPZ7 1027 aaPredicted RBP14.76□□□□□ -0.05
CNOT1-222ENST00000570139 APLP2Q06481 763 aa14.69□□□□□ -0.06
CNOT1-222ENST00000570139 ZNF219Q9P2Y4 722 aaPredicted RBP14.68□□□□□ -0.06
CNOT1-222ENST00000570139 PLCB2Q00722 1185 aa14.66□□□□□ -0.06
CNOT1-222ENST00000570139 SPDYE4A6NLX3 237 aa14.61□□□□□ -0.07
CNOT1-222ENST00000570139 DSG3P32926 999 aa14.61□□□□□ -0.07
CNOT1-222ENST00000570139 VASPP50552 380 aaPredicted RBP14.52□□□□□ -0.09
CNOT1-222ENST00000570139 PROM2Q8N271 834 aa14.49□□□□□ -0.09
CNOT1-222ENST00000570139 CAPN15O75808 1086 aa14.47□□□□□ -0.09
CNOT1-222ENST00000570139 HAP1P54257 671 aaPredicted RBP14.44□□□□□ -0.1
CNOT1-222ENST00000570139 DCAF8L2P0C7V8 631 aa14.42□□□□□ -0.1
CNOT1-222ENST00000570139 FBLN2P98095 1184 aa14.42□□□□□ -0.1
CNOT1-222ENST00000570139 SPINK5Q9NQ38 1064 aaPredicted RBP14.42□□□□□ -0.1
CNOT1-222ENST00000570139 MKRN4PQ13434 485 aaPredicted RBP14.37□□□□□ -0.11
CNOT1-222ENST00000570139 BCANQ96GW7 911 aa14.37□□□□□ -0.11
CNOT1-222ENST00000570139 IFNLR1Q8IU57 520 aaPredicted RBP14.34□□□□□ -0.11
CNOT1-222ENST00000570139 VSIG10Q8N0Z9 540 aa14.28□□□□□ -0.12
CNOT1-222ENST00000570139 PKD2Q13563 968 aa14.24□□□□□ -0.13
CNOT1-222ENST00000570139 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.17□□□□□ -0.14
CNOT1-222ENST00000570139 TRHP20396 242 aaPredicted RBP14.14□□□□□ -0.15
CNOT1-222ENST00000570139 POLA2Q14181 598 aa14.13□□□□□ -0.15
CNOT1-222ENST00000570139 TAOK2Q9UL54 1235 aa14.13□□□□□ -0.15
CNOT1-222ENST00000570139 BBXQ8WY36 941 aaPredicted RBP14.1□□□□□ -0.15
CNOT1-222ENST00000570139 ZBTB12Q9Y330 459 aaPredicted RBP14.1□□□□□ -0.15
CNOT1-222ENST00000570139 SPOCK2Q92563 424 aa14.08□□□□□ -0.16
CNOT1-222ENST00000570139 KLHL34Q8N239 644 aa14.06□□□□□ -0.16
CNOT1-222ENST00000570139 SP7Q8TDD2 431 aaPredicted RBP14.06□□□□□ -0.16
CNOT1-222ENST00000570139 CHRDL2Q6WN34 429 aa14.05□□□□□ -0.16
CNOT1-222ENST00000570139 PRKCSHP14314 528 aaPredicted RBP14.03□□□□□ -0.16
CNOT1-222ENST00000570139 ABCB7O75027 752 aa14.02□□□□□ -0.17
CNOT1-222ENST00000570139 ECM2O94769 699 aaPredicted RBP14.02□□□□□ -0.17
CNOT1-222ENST00000570139 RBM42Q9BTD8 480 aaKnown RBP14.01□□□□□ -0.17
CNOT1-222ENST00000570139 STAG3Q9UJ98 1225 aa13.97□□□□□ -0.17
CNOT1-222ENST00000570139 PAXIP1Q6ZW49 1069 aaPredicted RBP13.96□□□□□ -0.17
CNOT1-222ENST00000570139 CFAP44Q96MT7 982 aa13.93□□□□□ -0.18
CNOT1-222ENST00000570139 KDM2AQ9Y2K7 1162 aa13.92□□□□□ -0.18
CNOT1-222ENST00000570139 NPM1P06748 294 aaKnown RBP eCLIP13.89□□□□□ -0.19
CNOT1-222ENST00000570139 TPRNQ4KMQ1 711 aa13.89□□□□□ -0.19
CNOT1-222ENST00000570139 PLCD3Q8N3E9 789 aa13.87□□□□□ -0.19
CNOT1-222ENST00000570139 SPRYD3Q8NCJ5 442 aa13.86□□□□□ -0.19
CNOT1-222ENST00000570139 RGL2O15211 777 aa13.81□□□□□ -0.2
CNOT1-222ENST00000570139 ZNF692Q9BU19 519 aaPredicted RBP13.81□□□□□ -0.2
CNOT1-222ENST00000570139 CCDC180Q9P1Z9 1646 aa13.81□□□□□ -0.2
CNOT1-222ENST00000570139 MIER1Q8N108 512 aa13.75□□□□□ -0.21
CNOT1-222ENST00000570139 SPDYE2BA6NHP3 402 aa13.74□□□□□ -0.21
CNOT1-222ENST00000570139 SPDYE6P0CI01 402 aa13.74□□□□□ -0.21
CNOT1-222ENST00000570139 SPDYE2Q495Y8 402 aa13.74□□□□□ -0.21
CNOT1-222ENST00000570139 ZBTB47Q9UFB7 747 aaPredicted RBP13.73□□□□□ -0.21
CNOT1-222ENST00000570139 PLEKHG5O94827 1062 aa13.72□□□□□ -0.21
CNOT1-222ENST00000570139 TSHZ2Q9NRE2 1034 aa13.71□□□□□ -0.21
CNOT1-222ENST00000570139 SSUH2Q9Y2M2 353 aa13.7□□□□□ -0.22
CNOT1-222ENST00000570139 CHGAP10645 457 aaKnown RBP13.69□□□□□ -0.22
CNOT1-222ENST00000570139 TRIM41Q8WV44 630 aa13.68□□□□□ -0.22
CNOT1-222ENST00000570139 CIZ1Q9ULV3 898 aaPredicted RBP13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 167 ms