Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 DUX4L14-201ENST00000621227 1267 ntBASIC20.13■□□□□ 0.81
CX3CL1P78423 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC20.12■□□□□ 0.81
CX3CL1P78423 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
CX3CL1P78423 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CX3CL1P78423 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC20.12■□□□□ 0.81
CX3CL1P78423 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CX3CL1P78423 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC20.12■□□□□ 0.81
CX3CL1P78423 CHML-204ENST00000638121 920 ntTSL 2 BASIC20.12■□□□□ 0.81
CX3CL1P78423 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CX3CL1P78423 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC20.11■□□□□ 0.81
CX3CL1P78423 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CX3CL1P78423 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CX3CL1P78423 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC20.1■□□□□ 0.81
CX3CL1P78423 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CX3CL1P78423 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC20.1■□□□□ 0.81
CX3CL1P78423 DUX4L13-201ENST00000554103 1267 ntBASIC20.1■□□□□ 0.81
CX3CL1P78423 DUX4L15-201ENST00000611059 1267 ntBASIC20.1■□□□□ 0.81
CX3CL1P78423 DUX4L23-201ENST00000615195 1269 ntBASIC20.1■□□□□ 0.81
CX3CL1P78423 DUX4L24-201ENST00000617576 1269 ntBASIC20.1■□□□□ 0.81
CX3CL1P78423 DUX4L22-201ENST00000618238 1269 ntBASIC20.1■□□□□ 0.81
CX3CL1P78423 DUX4L20-201ENST00000619712 1269 ntBASIC20.1■□□□□ 0.81
CX3CL1P78423 DUX4L21-201ENST00000622058 1269 ntBASIC20.1■□□□□ 0.81
CX3CL1P78423 DUX4L10-201ENST00000622460 1267 ntBASIC20.1■□□□□ 0.81
CX3CL1P78423 DUX4L25-201ENST00000624915 1269 ntBASIC20.1■□□□□ 0.81
CX3CL1P78423 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CX3CL1P78423 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
CX3CL1P78423 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CX3CL1P78423 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CX3CL1P78423 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CX3CL1P78423 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CX3CL1P78423 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CX3CL1P78423 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CX3CL1P78423 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CX3CL1P78423 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.8
CX3CL1P78423 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CX3CL1P78423 SHF-207ENST00000560540 2062 ntTSL 5 BASIC20.07■□□□□ 0.8
CX3CL1P78423 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CX3CL1P78423 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CX3CL1P78423 AL121749.1-202ENST00000609313 2153 ntBASIC20.07■□□□□ 0.8
CX3CL1P78423 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC20.07■□□□□ 0.8
CX3CL1P78423 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CX3CL1P78423 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC20.07■□□□□ 0.8
CX3CL1P78423 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
CX3CL1P78423 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC20.06■□□□□ 0.8
CX3CL1P78423 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CX3CL1P78423 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CX3CL1P78423 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
CX3CL1P78423 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CX3CL1P78423 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC20.06■□□□□ 0.8
CX3CL1P78423 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CX3CL1P78423 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CX3CL1P78423 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CX3CL1P78423 RNF166-209ENST00000567844 633 ntTSL 5 BASIC20.05■□□□□ 0.8
CX3CL1P78423 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
CX3CL1P78423 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CX3CL1P78423 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CX3CL1P78423 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC20.05■□□□□ 0.8
CX3CL1P78423 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
CX3CL1P78423 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC20.04■□□□□ 0.8
CX3CL1P78423 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CX3CL1P78423 PEX7-203ENST00000541292 945 ntTSL 5 BASIC20.04■□□□□ 0.8
CX3CL1P78423 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CX3CL1P78423 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
CX3CL1P78423 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
CX3CL1P78423 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CX3CL1P78423 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CX3CL1P78423 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CX3CL1P78423 AGPS-202ENST00000409888 815 ntTSL 4 BASIC20.03■□□□□ 0.8
CX3CL1P78423 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CX3CL1P78423 MIR7108-201ENST00000614319 87 ntBASIC20.03■□□□□ 0.8
CX3CL1P78423 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC20.02■□□□□ 0.8
CX3CL1P78423 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC20.02■□□□□ 0.8
CX3CL1P78423 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC20.02■□□□□ 0.8
CX3CL1P78423 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
CX3CL1P78423 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CX3CL1P78423 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CX3CL1P78423 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CX3CL1P78423 BX255925.1-201ENST00000566954 1854 ntBASIC20.01■□□□□ 0.79
CX3CL1P78423 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CX3CL1P78423 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CX3CL1P78423 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CX3CL1P78423 CHST11-202ENST00000546689 756 ntTSL 2 BASIC20.01■□□□□ 0.79
CX3CL1P78423 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CX3CL1P78423 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CX3CL1P78423 LINC01003-201ENST00000564834 1764 ntBASIC20■□□□□ 0.79
CX3CL1P78423 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
CX3CL1P78423 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
CX3CL1P78423 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CX3CL1P78423 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC20■□□□□ 0.79
CX3CL1P78423 AC018358.1-201ENST00000631079 1402 ntBASIC20■□□□□ 0.79
CX3CL1P78423 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CX3CL1P78423 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CX3CL1P78423 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CX3CL1P78423 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CX3CL1P78423 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CX3CL1P78423 HES6-205ENST00000409356 528 ntTSL 2 BASIC19.99■□□□□ 0.79
CX3CL1P78423 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CX3CL1P78423 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC19.98■□□□□ 0.79
CX3CL1P78423 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
CX3CL1P78423 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms