Protein–RNA interactions for Protein: P50876

RNF144A, E3 ubiquitin-protein ligase RNF144A, humanhuman

Predicted RBP Predictions only

Length 292 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF144AP50876 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
RNF144AP50876 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
RNF144AP50876 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
RNF144AP50876 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
RNF144AP50876 ABHD17AP4-201ENST00000411545 909 ntBASIC23.25■■□□□ 1.31
RNF144AP50876 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
RNF144AP50876 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
RNF144AP50876 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
RNF144AP50876 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
RNF144AP50876 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
RNF144AP50876 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
RNF144AP50876 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC23.24■■□□□ 1.31
RNF144AP50876 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
RNF144AP50876 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
RNF144AP50876 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
RNF144AP50876 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC23.23■■□□□ 1.31
RNF144AP50876 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC23.23■■□□□ 1.31
RNF144AP50876 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
RNF144AP50876 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RNF144AP50876 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RNF144AP50876 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RNF144AP50876 CHML-204ENST00000638121 920 ntTSL 2 BASIC23.22■■□□□ 1.31
RNF144AP50876 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RNF144AP50876 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
RNF144AP50876 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC23.21■■□□□ 1.31
RNF144AP50876 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RNF144AP50876 LINC01971-201ENST00000617888 1048 ntBASIC23.21■■□□□ 1.31
RNF144AP50876 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RNF144AP50876 AL121749.1-202ENST00000609313 2153 ntBASIC23.2■■□□□ 1.3
RNF144AP50876 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
RNF144AP50876 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC23.2■■□□□ 1.3
RNF144AP50876 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC23.2■■□□□ 1.3
RNF144AP50876 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC23.2■■□□□ 1.3
RNF144AP50876 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
RNF144AP50876 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC23.19■■□□□ 1.3
RNF144AP50876 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RNF144AP50876 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
RNF144AP50876 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
RNF144AP50876 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RNF144AP50876 DUX4L11-201ENST00000611504 1267 ntBASIC23.19■■□□□ 1.3
RNF144AP50876 DUX4L12-201ENST00000614593 1267 ntBASIC23.19■■□□□ 1.3
RNF144AP50876 DUX4L14-201ENST00000621227 1267 ntBASIC23.19■■□□□ 1.3
RNF144AP50876 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
RNF144AP50876 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
RNF144AP50876 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RNF144AP50876 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RNF144AP50876 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
RNF144AP50876 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
RNF144AP50876 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
RNF144AP50876 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
RNF144AP50876 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RNF144AP50876 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RNF144AP50876 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RNF144AP50876 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
RNF144AP50876 CHST11-202ENST00000546689 756 ntTSL 2 BASIC23.16■■□□□ 1.3
RNF144AP50876 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
RNF144AP50876 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC23.16■■□□□ 1.3
RNF144AP50876 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
RNF144AP50876 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC23.15■■□□□ 1.3
RNF144AP50876 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC23.15■■□□□ 1.3
RNF144AP50876 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RNF144AP50876 PEX7-203ENST00000541292 945 ntTSL 5 BASIC23.15■■□□□ 1.3
RNF144AP50876 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC23.15■■□□□ 1.3
RNF144AP50876 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
RNF144AP50876 AC018358.1-201ENST00000631079 1402 ntBASIC23.15■■□□□ 1.3
RNF144AP50876 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC23.14■■□□□ 1.3
RNF144AP50876 RNF166-209ENST00000567844 633 ntTSL 5 BASIC23.14■■□□□ 1.29
RNF144AP50876 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
RNF144AP50876 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
RNF144AP50876 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
RNF144AP50876 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC23.13■■□□□ 1.29
RNF144AP50876 DUX4L13-201ENST00000554103 1267 ntBASIC23.13■■□□□ 1.29
RNF144AP50876 DUX4L15-201ENST00000611059 1267 ntBASIC23.13■■□□□ 1.29
RNF144AP50876 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC23.13■■□□□ 1.29
RNF144AP50876 DUX4L23-201ENST00000615195 1269 ntBASIC23.13■■□□□ 1.29
RNF144AP50876 DUX4L24-201ENST00000617576 1269 ntBASIC23.13■■□□□ 1.29
RNF144AP50876 DUX4L22-201ENST00000618238 1269 ntBASIC23.13■■□□□ 1.29
RNF144AP50876 DUX4L20-201ENST00000619712 1269 ntBASIC23.13■■□□□ 1.29
RNF144AP50876 DUX4L21-201ENST00000622058 1269 ntBASIC23.13■■□□□ 1.29
RNF144AP50876 DUX4L10-201ENST00000622460 1267 ntBASIC23.13■■□□□ 1.29
RNF144AP50876 DUX4L25-201ENST00000624915 1269 ntBASIC23.13■■□□□ 1.29
RNF144AP50876 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC23.13■■□□□ 1.29
RNF144AP50876 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
RNF144AP50876 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
RNF144AP50876 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
RNF144AP50876 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RNF144AP50876 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC23.12■■□□□ 1.29
RNF144AP50876 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC23.12■■□□□ 1.29
RNF144AP50876 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC23.12■■□□□ 1.29
RNF144AP50876 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC23.12■■□□□ 1.29
RNF144AP50876 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
RNF144AP50876 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
RNF144AP50876 PKM-203ENST00000389093 2279 ntTSL 5 BASIC23.11■■□□□ 1.29
RNF144AP50876 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
RNF144AP50876 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC23.1■■□□□ 1.29
RNF144AP50876 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RNF144AP50876 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RNF144AP50876 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
RNF144AP50876 CREM-210ENST00000374721 2020 ntTSL 5 BASIC23.09■■□□□ 1.29
RNF144AP50876 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms