Protein–RNA interactions for Protein: P30531

SLC6A1, Sodium- and chloride-dependent GABA transporter 1, humanhuman

Predictions only

Length 599 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A1P30531 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC21.66■■□□□ 1.06
SLC6A1P30531 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SLC6A1P30531 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC21.66■■□□□ 1.06
SLC6A1P30531 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SLC6A1P30531 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SLC6A1P30531 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SLC6A1P30531 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SLC6A1P30531 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
SLC6A1P30531 AC136428.2-201ENST00000563187 214 ntBASIC21.63■■□□□ 1.05
SLC6A1P30531 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC21.63■■□□□ 1.05
SLC6A1P30531 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC21.63■■□□□ 1.05
SLC6A1P30531 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SLC6A1P30531 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SLC6A1P30531 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
SLC6A1P30531 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SLC6A1P30531 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC21.62■■□□□ 1.05
SLC6A1P30531 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC21.62■■□□□ 1.05
SLC6A1P30531 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.62■■□□□ 1.05
SLC6A1P30531 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SLC6A1P30531 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC21.61■■□□□ 1.05
SLC6A1P30531 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SLC6A1P30531 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC21.61■■□□□ 1.05
SLC6A1P30531 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SLC6A1P30531 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
SLC6A1P30531 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SLC6A1P30531 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SLC6A1P30531 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SLC6A1P30531 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC21.6■■□□□ 1.05
SLC6A1P30531 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC21.59■■□□□ 1.05
SLC6A1P30531 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
SLC6A1P30531 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC21.59■■□□□ 1.05
SLC6A1P30531 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SLC6A1P30531 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
SLC6A1P30531 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
SLC6A1P30531 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
SLC6A1P30531 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
SLC6A1P30531 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC21.57■■□□□ 1.04
SLC6A1P30531 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.57■■□□□ 1.04
SLC6A1P30531 DUSP8P4-201ENST00000399538 1761 ntBASIC21.56■■□□□ 1.04
SLC6A1P30531 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SLC6A1P30531 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SLC6A1P30531 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SLC6A1P30531 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
SLC6A1P30531 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SLC6A1P30531 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC21.55■■□□□ 1.04
SLC6A1P30531 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.55■■□□□ 1.04
SLC6A1P30531 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
SLC6A1P30531 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SLC6A1P30531 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC21.54■■□□□ 1.04
SLC6A1P30531 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SLC6A1P30531 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC21.53■■□□□ 1.04
SLC6A1P30531 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SLC6A1P30531 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
SLC6A1P30531 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
SLC6A1P30531 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SLC6A1P30531 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SLC6A1P30531 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SLC6A1P30531 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
SLC6A1P30531 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SLC6A1P30531 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC21.52■■□□□ 1.04
SLC6A1P30531 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC21.52■■□□□ 1.04
SLC6A1P30531 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
SLC6A1P30531 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
SLC6A1P30531 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
SLC6A1P30531 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SLC6A1P30531 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC21.51■■□□□ 1.03
SLC6A1P30531 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SLC6A1P30531 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SLC6A1P30531 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
SLC6A1P30531 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC21.49■■□□□ 1.03
SLC6A1P30531 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SLC6A1P30531 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
SLC6A1P30531 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SLC6A1P30531 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SLC6A1P30531 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SLC6A1P30531 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
SLC6A1P30531 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SLC6A1P30531 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SLC6A1P30531 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
SLC6A1P30531 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC21.48■■□□□ 1.03
SLC6A1P30531 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.47■■□□□ 1.03
SLC6A1P30531 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SLC6A1P30531 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC21.47■■□□□ 1.03
SLC6A1P30531 AL133380.1-201ENST00000506013 324 ntBASIC21.47■■□□□ 1.03
SLC6A1P30531 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC21.47■■□□□ 1.03
SLC6A1P30531 SUZ12P1-203ENST00000578195 985 ntBASIC21.47■■□□□ 1.03
SLC6A1P30531 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
SLC6A1P30531 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SLC6A1P30531 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC21.46■■□□□ 1.03
SLC6A1P30531 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SLC6A1P30531 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC21.45■■□□□ 1.02
SLC6A1P30531 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SLC6A1P30531 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC21.45■■□□□ 1.02
SLC6A1P30531 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SLC6A1P30531 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
SLC6A1P30531 AC092803.2-201ENST00000564287 1899 ntBASIC21.45■■□□□ 1.02
SLC6A1P30531 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
SLC6A1P30531 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SLC6A1P30531 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
SLC6A1P30531 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 10 ms