Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HLA-DQA1P01909 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HLA-DQA1P01909 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC18.85■□□□□ 0.61
HLA-DQA1P01909 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC18.85■□□□□ 0.61
HLA-DQA1P01909 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
HLA-DQA1P01909 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HLA-DQA1P01909 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HLA-DQA1P01909 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HLA-DQA1P01909 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HLA-DQA1P01909 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
HLA-DQA1P01909 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
HLA-DQA1P01909 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
HLA-DQA1P01909 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.61
HLA-DQA1P01909 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
HLA-DQA1P01909 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
HLA-DQA1P01909 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC18.83■□□□□ 0.61
HLA-DQA1P01909 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HLA-DQA1P01909 DYNLL1-208ENST00000550178 581 ntBASIC18.83■□□□□ 0.6
HLA-DQA1P01909 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HLA-DQA1P01909 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC18.82■□□□□ 0.6
HLA-DQA1P01909 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC18.82■□□□□ 0.6
HLA-DQA1P01909 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
HLA-DQA1P01909 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC18.82■□□□□ 0.6
HLA-DQA1P01909 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
HLA-DQA1P01909 AC010864.1-201ENST00000609407 1511 ntBASIC18.81■□□□□ 0.6
HLA-DQA1P01909 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC18.81■□□□□ 0.6
HLA-DQA1P01909 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC18.81■□□□□ 0.6
HLA-DQA1P01909 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
HLA-DQA1P01909 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
HLA-DQA1P01909 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HLA-DQA1P01909 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HLA-DQA1P01909 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HLA-DQA1P01909 THRA-202ENST00000394121 2260 ntTSL 2 BASIC18.8■□□□□ 0.6
HLA-DQA1P01909 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC18.8■□□□□ 0.6
HLA-DQA1P01909 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC18.8■□□□□ 0.6
HLA-DQA1P01909 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HLA-DQA1P01909 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HLA-DQA1P01909 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HLA-DQA1P01909 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC18.79■□□□□ 0.6
HLA-DQA1P01909 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HLA-DQA1P01909 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HLA-DQA1P01909 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC18.78■□□□□ 0.6
HLA-DQA1P01909 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HLA-DQA1P01909 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
HLA-DQA1P01909 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HLA-DQA1P01909 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HLA-DQA1P01909 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
HLA-DQA1P01909 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
HLA-DQA1P01909 DUSP8P4-201ENST00000399538 1761 ntBASIC18.77■□□□□ 0.6
HLA-DQA1P01909 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
HLA-DQA1P01909 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DQA1P01909 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DQA1P01909 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DQA1P01909 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DQA1P01909 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DQA1P01909 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
HLA-DQA1P01909 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC18.75■□□□□ 0.59
HLA-DQA1P01909 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DQA1P01909 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DQA1P01909 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC18.75■□□□□ 0.59
HLA-DQA1P01909 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DQA1P01909 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC18.75■□□□□ 0.59
HLA-DQA1P01909 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DQA1P01909 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
HLA-DQA1P01909 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HLA-DQA1P01909 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC18.74■□□□□ 0.59
HLA-DQA1P01909 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HLA-DQA1P01909 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
HLA-DQA1P01909 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HLA-DQA1P01909 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
HLA-DQA1P01909 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
HLA-DQA1P01909 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HLA-DQA1P01909 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HLA-DQA1P01909 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HLA-DQA1P01909 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
HLA-DQA1P01909 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
HLA-DQA1P01909 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
HLA-DQA1P01909 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HLA-DQA1P01909 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HLA-DQA1P01909 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
HLA-DQA1P01909 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
HLA-DQA1P01909 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HLA-DQA1P01909 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HLA-DQA1P01909 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC18.71■□□□□ 0.59
HLA-DQA1P01909 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HLA-DQA1P01909 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
HLA-DQA1P01909 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
HLA-DQA1P01909 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HLA-DQA1P01909 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC18.69■□□□□ 0.58
HLA-DQA1P01909 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC18.69■□□□□ 0.58
HLA-DQA1P01909 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DQA1P01909 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DQA1P01909 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DQA1P01909 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-DQA1P01909 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-DQA1P01909 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-DQA1P01909 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC18.68■□□□□ 0.58
HLA-DQA1P01909 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-DQA1P01909 AC092803.2-201ENST00000564287 1899 ntBASIC18.67■□□□□ 0.58
HLA-DQA1P01909 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms