Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.42
UPK1AO00322 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
UPK1AO00322 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC23.89■■□□□ 1.41
UPK1AO00322 LINC01003-201ENST00000564834 1764 ntBASIC23.88■■□□□ 1.41
UPK1AO00322 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
UPK1AO00322 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC23.88■■□□□ 1.41
UPK1AO00322 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC23.88■■□□□ 1.41
UPK1AO00322 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
UPK1AO00322 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC23.87■■□□□ 1.41
UPK1AO00322 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC23.87■■□□□ 1.41
UPK1AO00322 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
UPK1AO00322 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
UPK1AO00322 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
UPK1AO00322 DUX4L29-201ENST00000425409 679 ntBASIC23.87■■□□□ 1.41
UPK1AO00322 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
UPK1AO00322 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
UPK1AO00322 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC23.86■■□□□ 1.41
UPK1AO00322 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC23.86■■□□□ 1.41
UPK1AO00322 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC23.86■■□□□ 1.41
UPK1AO00322 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
UPK1AO00322 PKM-203ENST00000389093 2279 ntTSL 5 BASIC23.85■■□□□ 1.41
UPK1AO00322 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
UPK1AO00322 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC23.84■■□□□ 1.41
UPK1AO00322 AL449106.1-201ENST00000608517 1980 ntBASIC23.84■■□□□ 1.41
UPK1AO00322 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC23.84■■□□□ 1.41
UPK1AO00322 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC23.84■■□□□ 1.41
UPK1AO00322 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
UPK1AO00322 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC23.84■■□□□ 1.41
UPK1AO00322 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC23.84■■□□□ 1.41
UPK1AO00322 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
UPK1AO00322 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
UPK1AO00322 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
UPK1AO00322 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC23.83■■□□□ 1.4
UPK1AO00322 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC23.82■■□□□ 1.4
UPK1AO00322 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC23.82■■□□□ 1.4
UPK1AO00322 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
UPK1AO00322 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
UPK1AO00322 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC23.81■■□□□ 1.4
UPK1AO00322 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
UPK1AO00322 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
UPK1AO00322 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
UPK1AO00322 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
UPK1AO00322 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
UPK1AO00322 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
UPK1AO00322 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC23.79■■□□□ 1.4
UPK1AO00322 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
UPK1AO00322 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
UPK1AO00322 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
UPK1AO00322 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
UPK1AO00322 HGH1-207ENST00000628266 258 ntTSL 5 BASIC23.78■■□□□ 1.4
UPK1AO00322 AP002414.2-202ENST00000590929 1450 ntBASIC23.78■■□□□ 1.4
UPK1AO00322 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC23.78■■□□□ 1.4
UPK1AO00322 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC23.77■■□□□ 1.4
UPK1AO00322 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
UPK1AO00322 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
UPK1AO00322 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
UPK1AO00322 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC23.77■■□□□ 1.4
UPK1AO00322 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
UPK1AO00322 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
UPK1AO00322 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
UPK1AO00322 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
UPK1AO00322 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC23.75■■□□□ 1.39
UPK1AO00322 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC23.75■■□□□ 1.39
UPK1AO00322 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
UPK1AO00322 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
UPK1AO00322 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
UPK1AO00322 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC23.74■■□□□ 1.39
UPK1AO00322 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
UPK1AO00322 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC23.73■■□□□ 1.39
UPK1AO00322 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC23.73■■□□□ 1.39
UPK1AO00322 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC23.72■■□□□ 1.39
UPK1AO00322 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC23.72■■□□□ 1.39
UPK1AO00322 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
UPK1AO00322 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
UPK1AO00322 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC23.72■■□□□ 1.39
UPK1AO00322 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC23.71■■□□□ 1.39
UPK1AO00322 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
UPK1AO00322 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC23.71■■□□□ 1.39
UPK1AO00322 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
UPK1AO00322 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
UPK1AO00322 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
UPK1AO00322 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC23.71■■□□□ 1.39
UPK1AO00322 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
UPK1AO00322 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
UPK1AO00322 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC23.7■■□□□ 1.38
UPK1AO00322 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC23.7■■□□□ 1.38
UPK1AO00322 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC23.7■■□□□ 1.38
UPK1AO00322 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
UPK1AO00322 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
UPK1AO00322 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
UPK1AO00322 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
UPK1AO00322 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
UPK1AO00322 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
UPK1AO00322 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
UPK1AO00322 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
UPK1AO00322 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
UPK1AO00322 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
UPK1AO00322 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
UPK1AO00322 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC23.67■■□□□ 1.38
UPK1AO00322 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms