Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRAV1-2A0A0B4J238 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC21.92■■□□□ 1.1
TRAV1-2A0A0B4J238 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
TRAV1-2A0A0B4J238 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC21.91■■□□□ 1.1
TRAV1-2A0A0B4J238 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
TRAV1-2A0A0B4J238 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TRAV1-2A0A0B4J238 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC21.9■■□□□ 1.1
TRAV1-2A0A0B4J238 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC21.9■■□□□ 1.1
TRAV1-2A0A0B4J238 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC21.9■■□□□ 1.1
TRAV1-2A0A0B4J238 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.1
TRAV1-2A0A0B4J238 DUSP8P4-201ENST00000399538 1761 ntBASIC21.89■■□□□ 1.1
TRAV1-2A0A0B4J238 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC21.89■■□□□ 1.09
TRAV1-2A0A0B4J238 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
TRAV1-2A0A0B4J238 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.88■■□□□ 1.09
TRAV1-2A0A0B4J238 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC21.88■■□□□ 1.09
TRAV1-2A0A0B4J238 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
TRAV1-2A0A0B4J238 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRAV1-2A0A0B4J238 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRAV1-2A0A0B4J238 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
TRAV1-2A0A0B4J238 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
TRAV1-2A0A0B4J238 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC21.87■■□□□ 1.09
TRAV1-2A0A0B4J238 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
TRAV1-2A0A0B4J238 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC21.86■■□□□ 1.09
TRAV1-2A0A0B4J238 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRAV1-2A0A0B4J238 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRAV1-2A0A0B4J238 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRAV1-2A0A0B4J238 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
TRAV1-2A0A0B4J238 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
TRAV1-2A0A0B4J238 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
TRAV1-2A0A0B4J238 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC21.85■■□□□ 1.09
TRAV1-2A0A0B4J238 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
TRAV1-2A0A0B4J238 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRAV1-2A0A0B4J238 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRAV1-2A0A0B4J238 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
TRAV1-2A0A0B4J238 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRAV1-2A0A0B4J238 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRAV1-2A0A0B4J238 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
TRAV1-2A0A0B4J238 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRAV1-2A0A0B4J238 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRAV1-2A0A0B4J238 AC092803.2-201ENST00000564287 1899 ntBASIC21.83■■□□□ 1.09
TRAV1-2A0A0B4J238 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
TRAV1-2A0A0B4J238 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
TRAV1-2A0A0B4J238 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
TRAV1-2A0A0B4J238 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRAV1-2A0A0B4J238 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRAV1-2A0A0B4J238 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC21.82■■□□□ 1.08
TRAV1-2A0A0B4J238 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC21.82■■□□□ 1.08
TRAV1-2A0A0B4J238 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRAV1-2A0A0B4J238 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRAV1-2A0A0B4J238 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
TRAV1-2A0A0B4J238 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
TRAV1-2A0A0B4J238 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
TRAV1-2A0A0B4J238 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
TRAV1-2A0A0B4J238 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC21.8■■□□□ 1.08
TRAV1-2A0A0B4J238 EBPL-202ENST00000378268 680 ntTSL 3 BASIC21.8■■□□□ 1.08
TRAV1-2A0A0B4J238 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC21.8■■□□□ 1.08
TRAV1-2A0A0B4J238 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TRAV1-2A0A0B4J238 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
TRAV1-2A0A0B4J238 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
TRAV1-2A0A0B4J238 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC21.8■■□□□ 1.08
TRAV1-2A0A0B4J238 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC21.79■■□□□ 1.08
TRAV1-2A0A0B4J238 AC135983.2-203ENST00000454486 1613 ntBASIC21.78■■□□□ 1.08
TRAV1-2A0A0B4J238 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRAV1-2A0A0B4J238 SETD8P1-201ENST00000623146 1180 ntBASIC21.78■■□□□ 1.08
TRAV1-2A0A0B4J238 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
TRAV1-2A0A0B4J238 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRAV1-2A0A0B4J238 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRAV1-2A0A0B4J238 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
TRAV1-2A0A0B4J238 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRAV1-2A0A0B4J238 AC093323.1-202ENST00000635031 2045 ntBASIC21.77■■□□□ 1.07
TRAV1-2A0A0B4J238 SNAI3-AS1-204ENST00000567997 2048 ntBASIC21.76■■□□□ 1.07
TRAV1-2A0A0B4J238 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRAV1-2A0A0B4J238 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRAV1-2A0A0B4J238 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
TRAV1-2A0A0B4J238 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
TRAV1-2A0A0B4J238 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
TRAV1-2A0A0B4J238 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRAV1-2A0A0B4J238 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRAV1-2A0A0B4J238 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
TRAV1-2A0A0B4J238 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRAV1-2A0A0B4J238 RARRES2P7-201ENST00000567349 469 ntBASIC21.75■■□□□ 1.07
TRAV1-2A0A0B4J238 AL391121.1-201ENST00000607967 1349 ntBASIC21.75■■□□□ 1.07
TRAV1-2A0A0B4J238 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRAV1-2A0A0B4J238 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
TRAV1-2A0A0B4J238 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC21.74■■□□□ 1.07
TRAV1-2A0A0B4J238 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TRAV1-2A0A0B4J238 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC21.74■■□□□ 1.07
TRAV1-2A0A0B4J238 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
TRAV1-2A0A0B4J238 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
TRAV1-2A0A0B4J238 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TRAV1-2A0A0B4J238 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC21.72■■□□□ 1.07
TRAV1-2A0A0B4J238 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRAV1-2A0A0B4J238 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC21.71■■□□□ 1.07
TRAV1-2A0A0B4J238 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
TRAV1-2A0A0B4J238 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRAV1-2A0A0B4J238 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC21.71■■□□□ 1.07
TRAV1-2A0A0B4J238 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
TRAV1-2A0A0B4J238 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRAV1-2A0A0B4J238 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRAV1-2A0A0B4J238 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms