RNA–Protein interactions for RNA: YKL068W

NUP100, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeastyeast

Gene NUP100, Length 2,880 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NUP100YKL068W MON2P48563 1636 aaPredicted RBP5.55□□□□□ -1.52
NUP100YKL068W RSE1Q04693 1361 aaKnown RBP5.42□□□□□ -1.54
NUP100YKL068W INO80P53115 1489 aa5.39□□□□□ -1.55
NUP100YKL068W MIF2P35201 549 aa5.24□□□□□ -1.57
NUP100YKL068W SPA2P23201 1466 aaKnown RBP5.17□□□□□ -1.58
NUP100YKL068W DNA2P38859 1522 aa5.11□□□□□ -1.59
NUP100YKL068W KOG1P38873 1557 aa5.09□□□□□ -1.59
NUP100YKL068W DRS1P32892 752 aaKnown RBP4.97□□□□□ -1.61
NUP100YKL068W MTC1P47018 478 aaKnown RBP4.91□□□□□ -1.62
NUP100YKL068W YFR006WP43590 535 aa4.84□□□□□ -1.63
NUP100YKL068W SWR1Q05471 1514 aa4.78□□□□□ -1.64
NUP100YKL068W TFA1P36100 482 aa4.59□□□□□ -1.67
NUP100YKL068W BFR2Q06631 534 aaKnown RBP4.53□□□□□ -1.68
NUP100YKL068W FAP1P53971 965 aa4.52□□□□□ -1.69
NUP100YKL068W REV3P14284 1504 aa4.46□□□□□ -1.7
NUP100YKL068W DNF1P32660 1571 aa4.41□□□□□ -1.7
NUP100YKL068W RQC2Q12532 1038 aaKnown RBP4.4□□□□□ -1.7
NUP100YKL068W TY1B-DR4Q07793 1604 aa4.38□□□□□ -1.71
NUP100YKL068W IRC20Q06554 1556 aa4.35□□□□□ -1.71
NUP100YKL068W MYO2P19524 1574 aaKnown RBP4.35□□□□□ -1.71
NUP100YKL068W MDS3P53094 1487 aa4.34□□□□□ -1.71
NUP100YKL068W TCB3Q03640 1545 aaKnown RBP4.33□□□□□ -1.72
NUP100YKL068W LTE1P07866 1435 aa4.33□□□□□ -1.72
NUP100YKL068W ABP1P15891 592 aaKnown RBP4.31□□□□□ -1.72
NUP100YKL068W AVT3P36062 692 aa4.3□□□□□ -1.72
NUP100YKL068W TAF7Q05021 590 aa4.28□□□□□ -1.72
NUP100YKL068W THO2P53552 1597 aaKnown RBP4.28□□□□□ -1.72
NUP100YKL068W PRY3P47033 881 aa4.26□□□□□ -1.73
NUP100YKL068W BNI1P41832 1953 aa4.24□□□□□ -1.73
NUP100YKL068W PEP1P32319 1579 aa4.24□□□□□ -1.73
NUP100YKL068W MET5P47169 1442 aa4.19□□□□□ -1.74
NUP100YKL068W DIP2Q12220 943 aaPredicted RBP4.19□□□□□ -1.74
NUP100YKL068W BPT1P14772 1559 aa4.18□□□□□ -1.74
NUP100YKL068W ESC1Q03661 1658 aaKnown RBP4.18□□□□□ -1.74
NUP100YKL068W ECM5Q03214 1411 aa4.18□□□□□ -1.74
NUP100YKL068W RPA190P10964 1664 aaKnown RBP4.17□□□□□ -1.74
NUP100YKL068W YOR093CQ12275 1648 aa4.17□□□□□ -1.74
NUP100YKL068W BUD4P47136 1447 aa4.16□□□□□ -1.74
NUP100YKL068W CDC25P04821 1589 aa4.13□□□□□ -1.75
NUP100YKL068W GEA2P39993 1459 aaKnown RBP4.13□□□□□ -1.75
NUP100YKL068W YCF1P39109 1515 aaKnown RBP4.12□□□□□ -1.75
NUP100YKL068W MMS1Q06211 1407 aa4.11□□□□□ -1.75
NUP100YKL068W HIR3P47171 1648 aa4.11□□□□□ -1.75
NUP100YKL068W SSK2P53599 1579 aa4.11□□□□□ -1.75
NUP100YKL068W RPO31P04051 1460 aa4.07□□□□□ -1.76
NUP100YKL068W DMA1P38823 416 aa4.05□□□□□ -1.76
NUP100YKL068W DNF2Q12675 1612 aa4.02□□□□□ -1.77
NUP100YKL068W SGS1P35187 1447 aa3.99□□□□□ -1.77
NUP100YKL068W RRD1P40454 393 aaKnown RBP3.99□□□□□ -1.77
NUP100YKL068W HAA1Q12753 694 aaKnown RBP3.99□□□□□ -1.77
NUP100YKL068W NTE1Q04958 1679 aa3.98□□□□□ -1.77
NUP100YKL068W ITT1Q04638 464 aa3.98□□□□□ -1.77
NUP100YKL068W PDR15Q04182 1529 aaKnown RBP3.96□□□□□ -1.78
NUP100YKL068W TAF2P23255 1407 aa3.94□□□□□ -1.78
NUP100YKL068W SPT6P23615 1451 aaKnown RBP3.93□□□□□ -1.78
NUP100YKL068W HSL1P34244 1518 aa3.92□□□□□ -1.78
NUP100YKL068W SIN3P22579 1536 aa3.92□□□□□ -1.78
NUP100YKL068W RKR1Q04781 1562 aa3.91□□□□□ -1.78
NUP100YKL068W YCK3P39962 524 aa3.91□□□□□ -1.78
NUP100YKL068W DRS2P39524 1355 aa3.91□□□□□ -1.78
NUP100YKL068W LEO1P38439 464 aa3.9□□□□□ -1.79
NUP100YKL068W PRI1P10363 409 aa3.84□□□□□ -1.8
NUP100YKL068W AAD16Q02895 342 aa3.82□□□□□ -1.8
NUP100YKL068W ATG2P53855 1592 aa3.81□□□□□ -1.8
NUP100YKL068W GLN1P32288 370 aaKnown RBP3.77□□□□□ -1.81
NUP100YKL068W ISW2Q08773 1120 aa3.76□□□□□ -1.81
NUP100YKL068W PTP3P40048 928 aa3.75□□□□□ -1.81
NUP100YKL068W SSA1P10591 642 aaKnown RBP3.74□□□□□ -1.81
NUP100YKL068W RPG1P38249 964 aaKnown RBP3.74□□□□□ -1.81
NUP100YKL068W SPT21P35209 758 aa3.71□□□□□ -1.82
NUP100YKL068W RIM101P33400 625 aa3.7□□□□□ -1.82
NUP100YKL068W YPK9Q12697 1472 aa3.69□□□□□ -1.82
NUP100YKL068W RPL17AP05740 184 aaKnown RBP3.68□□□□□ -1.82
NUP100YKL068W RPL17BP46990 184 aaKnown RBP3.68□□□□□ -1.82
NUP100YKL068W CHD1P32657 1468 aa3.68□□□□□ -1.82
NUP100YKL068W DOP1Q03921 1698 aa3.68□□□□□ -1.82
NUP100YKL068W VPS15P22219 1454 aa3.66□□□□□ -1.82
NUP100YKL068W BUD31P25337 157 aaPredicted RBP3.66□□□□□ -1.82
NUP100YKL068W DMA2P53924 522 aa3.66□□□□□ -1.82
NUP100YKL068W TRM732Q03496 1420 aa3.66□□□□□ -1.82
NUP100YKL068W YKR023WP36119 530 aaKnown RBP3.66□□□□□ -1.82
NUP100YKL068W LEU3P08638 886 aa3.65□□□□□ -1.82
NUP100YKL068W ESP1Q03018 1630 aa3.63□□□□□ -1.83
NUP100YKL068W PAN1P32521 1480 aa3.61□□□□□ -1.83
NUP100YKL068W TRM3Q07527 1436 aa3.6□□□□□ -1.83
NUP100YKL068W NUP170P38181 1502 aa3.6□□□□□ -1.83
NUP100YKL068W OXP1P28273 1286 aa3.6□□□□□ -1.83
NUP100YKL068W DNF3Q12674 1656 aa3.6□□□□□ -1.83
NUP100YKL068W SAS10Q12136 610 aaPredicted RBP3.58□□□□□ -1.84
NUP100YKL068W YAH1Q12184 172 aaKnown RBP3.58□□□□□ -1.84
NUP100YKL068W SCC2Q04002 1493 aa3.58□□□□□ -1.84
NUP100YKL068W YRF1-1P0CX20 1796 aa3.57□□□□□ -1.84
NUP100YKL068W YRF1-5P0CX21 1796 aa3.57□□□□□ -1.84
NUP100YKL068W YRF1-8P0CX22 1796 aa3.57□□□□□ -1.84
NUP100YKL068W REB1P21538 810 aa3.57□□□□□ -1.84
NUP100YKL068W SSP1P38871 571 aa3.56□□□□□ -1.84
NUP100YKL068W TSR3Q12094 313 aaKnown RBP3.56□□□□□ -1.84
NUP100YKL068W TY1B-BRQ12193 1756 aa3.54□□□□□ -1.84
NUP100YKL068W TY1B-GR3Q12316 1755 aa3.54□□□□□ -1.84
NUP100YKL068W TY1B-ORQ92393 1755 aa3.54□□□□□ -1.84
Retrieved 100 of 5,963 RNA–protein pairs in 13.4 ms