RNA–Protein interactions for RNA: YDR213W

UPC2, Transcript of Sterol regulatory element binding protein, yeast

Gene UPC2, Length 2,742 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UPC2	YDR213W	DRS1	P32892	752 aa	Known RBP	8.16	□□□□□ -1.1
UPC2	YDR213W	MON2	P48563	1636 aa	Predicted RBP	8.15	□□□□□ -1.1
UPC2	YDR213W	INO80	P53115	1489 aa		7.7	□□□□□ -1.18
UPC2	YDR213W	MTC1	P47018	478 aa	Known RBP	7.61	□□□□□ -1.19
UPC2	YDR213W	KOG1	P38873	1557 aa		7.49	□□□□□ -1.21
UPC2	YDR213W	DNA2	P38859	1522 aa		7.39	□□□□□ -1.23
UPC2	YDR213W	RSE1	Q04693	1361 aa	Known RBP	7.37	□□□□□ -1.23
UPC2	YDR213W	TFA1	P36100	482 aa		7.3	□□□□□ -1.24
UPC2	YDR213W	SPA2	P23201	1466 aa	Known RBP	7.27	□□□□□ -1.25
UPC2	YDR213W	BFR2	Q06631	534 aa	Known RBP	7.25	□□□□□ -1.25
UPC2	YDR213W	SWR1	Q05471	1514 aa		7.23	□□□□□ -1.25
UPC2	YDR213W	MIF2	P35201	549 aa		7	□□□□□ -1.29
UPC2	YDR213W	TY1B-DR4	Q07793	1604 aa		6.97	□□□□□ -1.29
UPC2	YDR213W	AVT3	P36062	692 aa		6.97	□□□□□ -1.29
UPC2	YDR213W	TCB3	Q03640	1545 aa	Known RBP	6.91	□□□□□ -1.3
UPC2	YDR213W	DIP2	Q12220	943 aa	Predicted RBP	6.78	□□□□□ -1.32
UPC2	YDR213W	THO2	P53552	1597 aa	Known RBP	6.72	□□□□□ -1.33
UPC2	YDR213W	REV3	P14284	1504 aa		6.67	□□□□□ -1.34
UPC2	YDR213W	PEP1	P32319	1579 aa		6.55	□□□□□ -1.36
UPC2	YDR213W	MYO2	P19524	1574 aa	Known RBP	6.51	□□□□□ -1.37
UPC2	YDR213W	DNF1	P32660	1571 aa		6.47	□□□□□ -1.37
UPC2	YDR213W	MDS3	P53094	1487 aa		6.45	□□□□□ -1.38
UPC2	YDR213W	SGS1	P35187	1447 aa		6.45	□□□□□ -1.38
UPC2	YDR213W	SSK2	P53599	1579 aa		6.44	□□□□□ -1.38
UPC2	YDR213W	YFR006W	P43590	535 aa		6.43	□□□□□ -1.38
UPC2	YDR213W	BUD4	P47136	1447 aa		6.42	□□□□□ -1.38
UPC2	YDR213W	LTE1	P07866	1435 aa		6.41	□□□□□ -1.38
UPC2	YDR213W	IRC20	Q06554	1556 aa		6.39	□□□□□ -1.39
UPC2	YDR213W	BPT1	P14772	1559 aa		6.35	□□□□□ -1.39
UPC2	YDR213W	MET5	P47169	1442 aa		6.35	□□□□□ -1.39
UPC2	YDR213W	SSN2	P38931	1420 aa		6.34	□□□□□ -1.39
UPC2	YDR213W	RQC2	Q12532	1038 aa	Known RBP	6.34	□□□□□ -1.39
UPC2	YDR213W	HSL1	P34244	1518 aa		6.32	□□□□□ -1.4
UPC2	YDR213W	ECM5	Q03214	1411 aa		6.31	□□□□□ -1.4
UPC2	YDR213W	ESC1	Q03661	1658 aa	Known RBP	6.3	□□□□□ -1.4
UPC2	YDR213W	SPT6	P23615	1451 aa	Known RBP	6.28	□□□□□ -1.4
UPC2	YDR213W	YCF1	P39109	1515 aa	Known RBP	6.28	□□□□□ -1.4
UPC2	YDR213W	BNI1	P41832	1953 aa		6.26	□□□□□ -1.41
UPC2	YDR213W	DMA1	P38823	416 aa		6.26	□□□□□ -1.41
UPC2	YDR213W	HIR3	P47171	1648 aa		6.26	□□□□□ -1.41
UPC2	YDR213W	RPA190	P10964	1664 aa	Known RBP	6.24	□□□□□ -1.41
UPC2	YDR213W	NOP2	P40991	618 aa	Known RBP	6.23	□□□□□ -1.41
UPC2	YDR213W	CDC25	P04821	1589 aa		6.21	□□□□□ -1.42
UPC2	YDR213W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	6.2	□□□□□ -1.42	not detected
UPC2	YDR213W	TAF7	Q05021	590 aa		6.13	□□□□□ -1.43
UPC2	YDR213W	YOR093C	Q12275	1648 aa		6.13	□□□□□ -1.43
UPC2	YDR213W	GEA2	P39993	1459 aa	Known RBP	6.13	□□□□□ -1.43
UPC2	YDR213W	ATG2	P53855	1592 aa		6.11	□□□□□ -1.43
UPC2	YDR213W	RPO31	P04051	1460 aa		6.1	□□□□□ -1.43
UPC2	YDR213W	RKR1	Q04781	1562 aa		6.06	□□□□□ -1.44
UPC2	YDR213W	SKI3	P17883	1432 aa	Known RBP	6.04	□□□□□ -1.44
UPC2	YDR213W	DNF2	Q12675	1612 aa		6.02	□□□□□ -1.45
UPC2	YDR213W	PTP3	P40048	928 aa		6	□□□□□ -1.45
UPC2	YDR213W	FAP1	P53971	965 aa		6	□□□□□ -1.45
UPC2	YDR213W	MMS1	Q06211	1407 aa		5.98	□□□□□ -1.45
UPC2	YDR213W	RPG1	P38249	964 aa	Known RBP	5.95	□□□□□ -1.46
UPC2	YDR213W	SAS10	Q12136	610 aa	Predicted RBP	5.94	□□□□□ -1.46
UPC2	YDR213W	RPL17A	P05740	184 aa	Known RBP	5.93	□□□□□ -1.46
UPC2	YDR213W	SPT21	P35209	758 aa		5.93	□□□□□ -1.46
UPC2	YDR213W	RPL17B	P46990	184 aa	Known RBP	5.93	□□□□□ -1.46
UPC2	YDR213W	ABP1	P15891	592 aa	Known RBP	5.93	□□□□□ -1.46
UPC2	YDR213W	SIN3	P22579	1536 aa		5.91	□□□□□ -1.46
UPC2	YDR213W	NTE1	Q04958	1679 aa		5.91	□□□□□ -1.46
UPC2	YDR213W	RIM101	P33400	625 aa		5.91	□□□□□ -1.46
UPC2	YDR213W	ISW2	Q08773	1120 aa		5.9	□□□□□ -1.46
UPC2	YDR213W	MMS22	Q06164	1454 aa		5.9	□□□□□ -1.47
UPC2	YDR213W	ESP1	Q03018	1630 aa		5.89	□□□□□ -1.47
UPC2	YDR213W	LEO1	P38439	464 aa		5.89	□□□□□ -1.47
UPC2	YDR213W	PDR15	Q04182	1529 aa	Known RBP	5.85	□□□□□ -1.47
UPC2	YDR213W	TAF2	P23255	1407 aa		5.84	□□□□□ -1.48
UPC2	YDR213W	PRI1	P10363	409 aa		5.83	□□□□□ -1.48
UPC2	YDR213W	OXP1	P28273	1286 aa		5.83	□□□□□ -1.48
UPC2	YDR213W	CAB3	P36076	571 aa		5.82	□□□□□ -1.48
UPC2	YDR213W	YPR148C	Q06523	435 aa		5.82	□□□□□ -1.48
UPC2	YDR213W	DRS2	P39524	1355 aa		5.82	□□□□□ -1.48
UPC2	YDR213W	XRN1	P22147	1528 aa	Known RBP	5.81	□□□□□ -1.48
UPC2	YDR213W	SSP1	P38871	571 aa		5.81	□□□□□ -1.48
UPC2	YDR213W	EBP2	P36049	427 aa	Known RBP	5.78	□□□□□ -1.48
UPC2	YDR213W	ENP1	P38333	483 aa	Known RBP	5.78	□□□□□ -1.48
UPC2	YDR213W	SPT7	P35177	1332 aa		5.78	□□□□□ -1.48
UPC2	YDR213W	CHD1	P32657	1468 aa		5.78	□□□□□ -1.48
UPC2	YDR213W	LEU3	P08638	886 aa		5.77	□□□□□ -1.49
UPC2	YDR213W	TRM732	Q03496	1420 aa		5.77	□□□□□ -1.49
UPC2	YDR213W	UFD4	P33202	1483 aa		5.76	□□□□□ -1.49
UPC2	YDR213W	TY1B-BR	Q12193	1756 aa		5.76	□□□□□ -1.49
UPC2	YDR213W	TY1B-GR3	Q12316	1755 aa		5.76	□□□□□ -1.49
UPC2	YDR213W	TY1B-OR	Q92393	1755 aa		5.76	□□□□□ -1.49
UPC2	YDR213W	POL5	P39985	1022 aa	Known RBP	5.75	□□□□□ -1.49
UPC2	YDR213W	ITT1	Q04638	464 aa		5.75	□□□□□ -1.49
UPC2	YDR213W	YPK9	Q12697	1472 aa		5.74	□□□□□ -1.49
UPC2	YDR213W	YLR271W	Q06152	274 aa		5.73	□□□□□ -1.49
UPC2	YDR213W	RTT106	P40161	455 aa		5.73	□□□□□ -1.49
UPC2	YDR213W	PAN1	P32521	1480 aa		5.72	□□□□□ -1.49
UPC2	YDR213W	IKI3	Q06706	1349 aa	Known RBP	5.72	□□□□□ -1.49
UPC2	YDR213W	SSM4	P40318	1319 aa		5.71	□□□□□ -1.49
UPC2	YDR213W	REB1	P21538	810 aa		5.71	□□□□□ -1.49
UPC2	YDR213W	TRM3	Q07527	1436 aa		5.7	□□□□□ -1.5
UPC2	YDR213W	DOP1	Q03921	1698 aa		5.69	□□□□□ -1.5
UPC2	YDR213W	STU1	P38198	1513 aa		5.67	□□□□□ -1.5
UPC2	YDR213W	VPS15	P22219	1454 aa		5.67	□□□□□ -1.5

Retrieved 100 of 5,963 RNA–protein pairs in 12.1 ms