RNA–Protein interactions for RNA: YDL154W

MSH5, Transcript of Protein of the MutS family, yeastyeast

Gene MSH5, Length 2,706 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
MSH5YDL154W DRS1P32892 752 aaKnown RBP5.32□□□□□ -1.56
MSH5YDL154W MTC1P47018 478 aaKnown RBP5.13□□□□□ -1.59
MSH5YDL154W FAP1P53971 965 aa5.1□□□□□ -1.59
MSH5YDL154W PRY3P47033 881 aa4.73□□□□□ -1.65
MSH5YDL154W BFR2Q06631 534 aaKnown RBP4.68□□□□□ -1.66
MSH5YDL154W DIP2Q12220 943 aaPredicted RBP4.46□□□□□ -1.69
MSH5YDL154W HAA1Q12753 694 aaKnown RBP4.41□□□□□ -1.7
MSH5YDL154W MON2P48563 1636 aaPredicted RBP4.4□□□□□ -1.7
MSH5YDL154W TFA1P36100 482 aa4.39□□□□□ -1.71
MSH5YDL154W AAD16Q02895 342 aa4.39□□□□□ -1.71
MSH5YDL154W AVT3P36062 692 aa4.36□□□□□ -1.71
MSH5YDL154W MIF2P35201 549 aa4.29□□□□□ -1.72
MSH5YDL154W RSE1Q04693 1361 aaKnown RBP4.28□□□□□ -1.72
MSH5YDL154W ISW2Q08773 1120 aa4.21□□□□□ -1.74
MSH5YDL154W PRI1P10363 409 aa4.18□□□□□ -1.74
MSH5YDL154W SPA2P23201 1466 aaKnown RBP4.15□□□□□ -1.75
MSH5YDL154W RPG1P38249 964 aaKnown RBP4.12□□□□□ -1.75
MSH5YDL154W INO80P53115 1489 aa4.12□□□□□ -1.75
MSH5YDL154W MRPL32P25348 183 aa4.06□□□□□ -1.76
MSH5YDL154W RPL17AP05740 184 aaKnown RBP4.06□□□□□ -1.76
MSH5YDL154W RPL17BP46990 184 aaKnown RBP4.06□□□□□ -1.76
MSH5YDL154W TSR3Q12094 313 aaKnown RBP4.03□□□□□ -1.76
MSH5YDL154W REB1P21538 810 aa4.02□□□□□ -1.77
MSH5YDL154W RQC2Q12532 1038 aaKnown RBP3.99□□□□□ -1.77
MSH5YDL154W YGL015CP33199 130 aa3.97□□□□□ -1.77
MSH5YDL154W DNA2P38859 1522 aa3.95□□□□□ -1.78
MSH5YDL154W KOG1P38873 1557 aa3.93□□□□□ -1.78
MSH5YDL154W YFR006WP43590 535 aa3.9□□□□□ -1.78
MSH5YDL154W YCK3P39962 524 aa3.87□□□□□ -1.79
MSH5YDL154W PTP3P40048 928 aa3.84□□□□□ -1.79
MSH5YDL154W SPT21P35209 758 aa3.8□□□□□ -1.8
MSH5YDL154W RIM101P33400 625 aa3.79□□□□□ -1.8
MSH5YDL154W SIS1P25294 352 aaKnown RBP3.78□□□□□ -1.8
MSH5YDL154W YAH1Q12184 172 aaKnown RBP3.76□□□□□ -1.81
MSH5YDL154W YIL055CP40523 627 aaKnown RBP3.75□□□□□ -1.81
MSH5YDL154W SSP1P38871 571 aa3.74□□□□□ -1.81
MSH5YDL154W UBP9P39967 754 aa3.72□□□□□ -1.81
MSH5YDL154W ARP8Q12386 881 aaKnown RBP RIP-Chip data3.72□□□□□ -1.81not detected
MSH5YDL154W BUD31P25337 157 aaPredicted RBP3.72□□□□□ -1.81
MSH5YDL154W DMA1P38823 416 aa3.71□□□□□ -1.82
MSH5YDL154W OXP1P28273 1286 aa3.68□□□□□ -1.82
MSH5YDL154W YKR023WP36119 530 aaKnown RBP3.66□□□□□ -1.82
MSH5YDL154W SWR1Q05471 1514 aa3.66□□□□□ -1.82
MSH5YDL154W HOP09932 586 aa3.66□□□□□ -1.82
MSH5YDL154W RSM7P47150 247 aa3.63□□□□□ -1.83
MSH5YDL154W TIF4632P39936 914 aaKnown RBP3.62□□□□□ -1.83
MSH5YDL154W TFC8Q12308 588 aa3.62□□□□□ -1.83
MSH5YDL154W YLR271WQ06152 274 aa3.61□□□□□ -1.83
MSH5YDL154W DCD1P06773 312 aa3.61□□□□□ -1.83
MSH5YDL154W CDC27P38042 758 aa3.59□□□□□ -1.83
MSH5YDL154W MGA2P40578 1113 aa3.58□□□□□ -1.84
MSH5YDL154W BBC1P47068 1157 aa3.57□□□□□ -1.84
MSH5YDL154W UBP10P53874 792 aaPredicted RBP3.57□□□□□ -1.84
MSH5YDL154W AI2P03876 854 aa3.55□□□□□ -1.84
MSH5YDL154W BCH2P36122 765 aa3.52□□□□□ -1.85
MSH5YDL154W CST9Q06032 482 aa3.52□□□□□ -1.85
MSH5YDL154W SCY1P53009 804 aa3.5□□□□□ -1.85
MSH5YDL154W EPS1P40557 701 aa3.49□□□□□ -1.85
MSH5YDL154W PSD2P53037 1138 aaKnown RBP3.49□□□□□ -1.85
MSH5YDL154W MAP2P38174 421 aaKnown RBP3.48□□□□□ -1.85
MSH5YDL154W DNF1P32660 1571 aa3.47□□□□□ -1.85
MSH5YDL154W MRM1P25270 412 aa3.46□□□□□ -1.86
MSH5YDL154W SLX5P32828 619 aaKnown RBP3.46□□□□□ -1.86
MSH5YDL154W IRC20Q06554 1556 aa3.45□□□□□ -1.86
MSH5YDL154W BDF1P35817 686 aa3.44□□□□□ -1.86
MSH5YDL154W YJL171CP46992 396 aa3.43□□□□□ -1.86
MSH5YDL154W RTG3P38165 486 aa3.42□□□□□ -1.86
MSH5YDL154W TGL3P40308 642 aa3.42□□□□□ -1.86
MSH5YDL154W MDS3P53094 1487 aa3.4□□□□□ -1.86
MSH5YDL154W RAM2P29703 316 aa3.4□□□□□ -1.87
MSH5YDL154W REV3P14284 1504 aa3.38□□□□□ -1.87
MSH5YDL154W SET1P38827 1080 aaKnown RBP3.38□□□□□ -1.87
MSH5YDL154W LEO1P38439 464 aa3.38□□□□□ -1.87
MSH5YDL154W SAS10Q12136 610 aaPredicted RBP3.38□□□□□ -1.87
MSH5YDL154W RCR1P38212 213 aa3.37□□□□□ -1.87
MSH5YDL154W SPB4P25808 606 aaPredicted RBP3.37□□□□□ -1.87
MSH5YDL154W VPS70P47161 811 aa3.36□□□□□ -1.87
MSH5YDL154W MYO2P19524 1574 aaKnown RBP3.36□□□□□ -1.87
MSH5YDL154W IFH1P39520 1085 aa3.36□□□□□ -1.87
MSH5YDL154W TAF7Q05021 590 aa3.35□□□□□ -1.87
MSH5YDL154W LEU3P08638 886 aa3.35□□□□□ -1.87
MSH5YDL154W MAK11P20484 414 aaKnown RBP3.35□□□□□ -1.87
MSH5YDL154W CKB1P43639 278 aa3.34□□□□□ -1.87
MSH5YDL154W YMR1P47147 688 aaKnown RBP RIP-Chip data3.33□□□□□ -1.88not detected
MSH5YDL154W GTT3P39996 337 aa3.32□□□□□ -1.88
MSH5YDL154W VPS29P38759 282 aa3.32□□□□□ -1.88
MSH5YDL154W BNI1P41832 1953 aa3.31□□□□□ -1.88
MSH5YDL154W DBP1P24784 617 aaKnown RBP3.31□□□□□ -1.88
MSH5YDL154W COQ8P27697 501 aa3.31□□□□□ -1.88
MSH5YDL154W YOR238WQ08634 303 aa3.31□□□□□ -1.88
MSH5YDL154W PIB1Q06651 286 aa3.3□□□□□ -1.88
MSH5YDL154W RPN1P38764 993 aaKnown RBP3.29□□□□□ -1.88
MSH5YDL154W LTE1P07866 1435 aa3.29□□□□□ -1.88
MSH5YDL154W YAP5P40574 245 aa3.28□□□□□ -1.88
MSH5YDL154W SPP1Q03012 353 aa3.28□□□□□ -1.88
MSH5YDL154W YPR148CQ06523 435 aa3.28□□□□□ -1.88
MSH5YDL154W STS1P38637 319 aa3.28□□□□□ -1.89
MSH5YDL154W PBS2P08018 668 aa3.26□□□□□ -1.89
MSH5YDL154W NOP53Q12080 455 aaKnown RBP3.26□□□□□ -1.89
MSH5YDL154W WSC3Q12215 556 aa3.26□□□□□ -1.89
Retrieved 100 of 5,963 RNA–protein pairs in 11.7 ms