RNA–Protein interactions for RNA: YBL054W

TOD6, Transcript of PAC motif binding protein involved in rRNA and ribosome biogenesis, yeastyeast

Gene TOD6, Length 1,578 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
TOD6YBL054W SPA2P23201 1466 aaKnown RBP11.5□□□□□ -0.57
TOD6YBL054W SGS1P35187 1447 aa11.49□□□□□ -0.57
TOD6YBL054W SSN2P38931 1420 aa11.31□□□□□ -0.6
TOD6YBL054W INO80P53115 1489 aa11.13□□□□□ -0.63
TOD6YBL054W DRS1P32892 752 aaKnown RBP10.92□□□□□ -0.66
TOD6YBL054W SKI3P17883 1432 aaKnown RBP10.83□□□□□ -0.68
TOD6YBL054W TCB3Q03640 1545 aaKnown RBP10.74□□□□□ -0.69
TOD6YBL054W TY1B-DR4Q07793 1604 aa10.57□□□□□ -0.72
TOD6YBL054W HSL1P34244 1518 aa10.52□□□□□ -0.72
TOD6YBL054W CHD1P32657 1468 aa10.47□□□□□ -0.73
TOD6YBL054W MMS22Q06164 1454 aa10.47□□□□□ -0.73
TOD6YBL054W SPT6P23615 1451 aaKnown RBP10.45□□□□□ -0.74
TOD6YBL054W XRN1P22147 1528 aaKnown RBP10.37□□□□□ -0.75
TOD6YBL054W HIR3P47171 1648 aa10.36□□□□□ -0.75
TOD6YBL054W NOP2P40991 618 aaKnown RBP10.33□□□□□ -0.76
TOD6YBL054W THO2P53552 1597 aaKnown RBP10.31□□□□□ -0.76
TOD6YBL054W REV3P14284 1504 aa10.29□□□□□ -0.76
TOD6YBL054W SIN3P22579 1536 aa10.26□□□□□ -0.77
TOD6YBL054W UFD4P33202 1483 aa10.24□□□□□ -0.77
TOD6YBL054W SSK2P53599 1579 aa10.24□□□□□ -0.77
TOD6YBL054W NSR1P27476 414 aaKnown RBP RIP-Chip data10.23□□□□□ -0.77not detected
TOD6YBL054W MYO2P19524 1574 aaKnown RBP10.16□□□□□ -0.78
TOD6YBL054W TAF2P23255 1407 aa10.14□□□□□ -0.79
TOD6YBL054W STU1P38198 1513 aa10.14□□□□□ -0.79
TOD6YBL054W RSE1Q04693 1361 aaKnown RBP10.13□□□□□ -0.79
TOD6YBL054W TRM732Q03496 1420 aa10.1□□□□□ -0.79
TOD6YBL054W ESP1Q03018 1630 aa10.1□□□□□ -0.79
TOD6YBL054W POL1P13382 1468 aa10.08□□□□□ -0.8
TOD6YBL054W YTA7P40340 1379 aa10.05□□□□□ -0.8
TOD6YBL054W SWR1Q05471 1514 aa10.05□□□□□ -0.8
TOD6YBL054W SAS10Q12136 610 aaPredicted RBP10.02□□□□□ -0.81
TOD6YBL054W BPT1P14772 1559 aa10.02□□□□□ -0.81
TOD6YBL054W IKI3Q06706 1349 aaKnown RBP10.02□□□□□ -0.81
TOD6YBL054W SPP41P38904 1435 aa10.02□□□□□ -0.81
TOD6YBL054W MON2P48563 1636 aaPredicted RBP9.97□□□□□ -0.81
TOD6YBL054W SCC2Q04002 1493 aa9.95□□□□□ -0.82
TOD6YBL054W MYO4P32492 1471 aa9.92□□□□□ -0.82
TOD6YBL054W NUP170P38181 1502 aa9.92□□□□□ -0.82
TOD6YBL054W ECM5Q03214 1411 aa9.91□□□□□ -0.82
TOD6YBL054W BFR2Q06631 534 aaKnown RBP9.91□□□□□ -0.82
TOD6YBL054W YPK9Q12697 1472 aa9.91□□□□□ -0.82
TOD6YBL054W RKR1Q04781 1562 aa9.88□□□□□ -0.83
TOD6YBL054W DNA2P38859 1522 aa9.88□□□□□ -0.83
TOD6YBL054W YOR1P53049 1477 aa9.88□□□□□ -0.83
TOD6YBL054W ENP1P38333 483 aaKnown RBP9.88□□□□□ -0.83
TOD6YBL054W SSM4P40318 1319 aa9.86□□□□□ -0.83
TOD6YBL054W BUD4P47136 1447 aa9.86□□□□□ -0.83
TOD6YBL054W ATG2P53855 1592 aa9.84□□□□□ -0.83
TOD6YBL054W POL5P39985 1022 aaKnown RBP9.81□□□□□ -0.84
TOD6YBL054W SNQ2P32568 1501 aaKnown RBP9.8□□□□□ -0.84
TOD6YBL054W TAF7Q05021 590 aa9.79□□□□□ -0.84
TOD6YBL054W SMC4Q12267 1418 aa9.79□□□□□ -0.84
TOD6YBL054W MLP2P40457 1679 aa9.77□□□□□ -0.85
TOD6YBL054W STH1P32597 1359 aa9.76□□□□□ -0.85
TOD6YBL054W PAN1P32521 1480 aa9.75□□□□□ -0.85
TOD6YBL054W SEC3P33332 1336 aaKnown RBP9.71□□□□□ -0.85
TOD6YBL054W PDR15Q04182 1529 aaKnown RBP9.71□□□□□ -0.86
TOD6YBL054W SPT7P35177 1332 aa9.7□□□□□ -0.86
TOD6YBL054W YCF1P39109 1515 aaKnown RBP9.69□□□□□ -0.86
TOD6YBL054W RPO31P04051 1460 aa9.69□□□□□ -0.86
TOD6YBL054W TOP2P06786 1428 aaKnown RBP9.69□□□□□ -0.86
TOD6YBL054W GEA1P47102 1408 aaPredicted RBP9.69□□□□□ -0.86
TOD6YBL054W PEP1P32319 1579 aa9.68□□□□□ -0.86
TOD6YBL054W PDR10P51533 1564 aa9.68□□□□□ -0.86
TOD6YBL054W TSC11P40061 1430 aa9.66□□□□□ -0.86
TOD6YBL054W KOG1P38873 1557 aa9.66□□□□□ -0.86
TOD6YBL054W RTT106P40161 455 aa9.65□□□□□ -0.86
TOD6YBL054W IFH1P39520 1085 aa9.64□□□□□ -0.87
TOD6YBL054W ULS1Q08562 1619 aa9.64□□□□□ -0.87
TOD6YBL054W TY1B-DR3Q99231 1755 aa9.62□□□□□ -0.87
TOD6YBL054W TY2B-LR1P0C2J3 1770 aa9.6□□□□□ -0.87
TOD6YBL054W TY2B-FP0CX63 1770 aa9.6□□□□□ -0.87
TOD6YBL054W TY2B-GR2P0CX64 1770 aa9.6□□□□□ -0.87
TOD6YBL054W TY2B-CP25384 1770 aa9.6□□□□□ -0.87
TOD6YBL054W TY2B-DR2Q03494 1770 aa9.6□□□□□ -0.87
TOD6YBL054W TY1B-DR1Q03855 1755 aa9.6□□□□□ -0.87
TOD6YBL054W TY2B-DR3Q07791 1770 aaKnown RBP9.6□□□□□ -0.87
TOD6YBL054W TY2B-OR1Q12113 1770 aa9.6□□□□□ -0.87
TOD6YBL054W TY2B-DR1Q12472 1770 aa9.6□□□□□ -0.87
TOD6YBL054W TY2B-OR2Q12501 1770 aa9.6□□□□□ -0.87
TOD6YBL054W TY3B-GQ99315 1547 aa9.57□□□□□ -0.88
TOD6YBL054W PRS1P32895 427 aaKnown RBP9.55□□□□□ -0.88
TOD6YBL054W MDS3P53094 1487 aa9.54□□□□□ -0.88
TOD6YBL054W TY2B-BQ12491 1770 aa9.54□□□□□ -0.88
TOD6YBL054W VPS15P22219 1454 aa9.5□□□□□ -0.89
TOD6YBL054W DNF1P32660 1571 aa9.5□□□□□ -0.89
TOD6YBL054W ESC1Q03661 1658 aaKnown RBP9.49□□□□□ -0.89
TOD6YBL054W YBT1P32386 1661 aa9.48□□□□□ -0.89
TOD6YBL054W NUP159P40477 1460 aa9.47□□□□□ -0.89
TOD6YBL054W SRB8P25648 1427 aa9.47□□□□□ -0.89
TOD6YBL054W CAB3P36076 571 aa9.46□□□□□ -0.9
TOD6YBL054W LEU3P08638 886 aa9.45□□□□□ -0.9
TOD6YBL054W TFA1P36100 482 aa9.45□□□□□ -0.9
TOD6YBL054W YLR419WQ06698 1435 aaKnown RBP9.44□□□□□ -0.9
TOD6YBL054W VTH1P40438 1549 aa9.43□□□□□ -0.9
TOD6YBL054W VTH2P40890 1549 aa9.43□□□□□ -0.9
TOD6YBL054W TY1B-HO13535 1793 aa9.43□□□□□ -0.9
TOD6YBL054W TY1B-DR5P0C2I2 1755 aa9.43□□□□□ -0.9
TOD6YBL054W TY1B-DR6P0C2I3 1755 aa9.43□□□□□ -0.9
TOD6YBL054W TY1B-LR2P0C2I5 1755 aa9.43□□□□□ -0.9
Retrieved 100 of 5,963 RNA–protein pairs in 12.6 ms