RNA–Protein interactions for RNA: ENST00000640408.1

RTTN-218, Transcript of rotatin, humanhuman

TSL 5

Gene RTTN, Length 5,589 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTTN-218ENST00000640408 NISCHQ9Y2I1 1504 aa12.04□□□□□ -0.48
RTTN-218ENST00000640408 CCDC180Q9P1Z9 1646 aa10.53□□□□□ -0.72
RTTN-218ENST00000640408 DCAF8L2P0C7V8 631 aa10.5□□□□□ -0.73
RTTN-218ENST00000640408 ABCC9O60706 1549 aa10.31□□□□□ -0.76
RTTN-218ENST00000640408 NACADO15069 1562 aa10.04□□□□□ -0.8
RTTN-218ENST00000640408 RB1CC1Q8TDY2 1594 aa10.02□□□□□ -0.81
RTTN-218ENST00000640408 ZCCHC6Q5VYS8 1495 aaKnown RBP10.01□□□□□ -0.81
RTTN-218ENST00000640408 MYO15BQ96JP2 1530 aa10□□□□□ -0.81
RTTN-218ENST00000640408 DCAF1Q9Y4B6 1507 aa10□□□□□ -0.81
RTTN-218ENST00000640408 SHROOM4Q9ULL8 1493 aa9.78□□□□□ -0.84
RTTN-218ENST00000640408 PABPN1Q86U42 306 aaKnown RBP eCLIP9.74□□□□□ -0.85
RTTN-218ENST00000640408 SCRIBQ14160 1630 aa9.65□□□□□ -0.86
RTTN-218ENST00000640408 SUPT5HO00267 1087 aaKnown RBP9.52□□□□□ -0.89
RTTN-218ENST00000640408 MYT1Q01538 1121 aa9.48□□□□□ -0.89
RTTN-218ENST00000640408 PELP1Q8IZL8 1130 aaKnown RBP9.43□□□□□ -0.9
RTTN-218ENST00000640408 BAZ1AQ9NRL2 1556 aaPredicted RBP9.43□□□□□ -0.9
RTTN-218ENST00000640408 SMARCA2P51531 1590 aa9.35□□□□□ -0.91
RTTN-218ENST00000640408 BICRAQ9NZM4 1560 aa9.34□□□□□ -0.91
RTTN-218ENST00000640408 BAZ1BQ9UIG0 1483 aaKnown RBP9.3□□□□□ -0.92
RTTN-218ENST00000640408 CECR2Q9BXF3 1484 aa9.29□□□□□ -0.92
RTTN-218ENST00000640408 EIF4G1Q04637 1599 aaKnown RBP9.28□□□□□ -0.92
RTTN-218ENST00000640408 RSF1Q96T23 1441 aaPredicted RBP9.27□□□□□ -0.93
RTTN-218ENST00000640408 NCAPD3P42695 1498 aa9.26□□□□□ -0.93
RTTN-218ENST00000640408 ATAD2BQ9ULI0 1458 aa9.25□□□□□ -0.93
RTTN-218ENST00000640408 SMARCA4P51532 1647 aa9.22□□□□□ -0.93
RTTN-218ENST00000640408 UNC13AQ9UPW8 1703 aa9.21□□□□□ -0.94
RTTN-218ENST00000640408 MROH2BQ7Z745 1585 aa9.19□□□□□ -0.94
RTTN-218ENST00000640408 HMGXB3Q12766 1538 aa9.16□□□□□ -0.94
RTTN-218ENST00000640408 CC2D2AQ9P2K1 1620 aa9.15□□□□□ -0.95
RTTN-218ENST00000640408 PDS5BQ9NTI5 1447 aa9.14□□□□□ -0.95
RTTN-218ENST00000640408 CADPSQ9ULU8 1353 aa9.11□□□□□ -0.95
RTTN-218ENST00000640408 TOP2AP11388 1531 aaKnown RBP9.1□□□□□ -0.95
RTTN-218ENST00000640408 FAM9AQ8IZU1 332 aaPredicted RBP9.1□□□□□ -0.95
RTTN-218ENST00000640408 DNAJC5BQ9UF47 199 aa9.1□□□□□ -0.95
RTTN-218ENST00000640408 PEG3Q9GZU2 1588 aa9.09□□□□□ -0.95
RTTN-218ENST00000640408 ERCC6Q03468 1493 aa9.08□□□□□ -0.96
RTTN-218ENST00000640408 TRIM41Q8WV44 630 aa9.07□□□□□ -0.96
RTTN-218ENST00000640408 ABCC8Q09428 1581 aa9□□□□□ -0.97
RTTN-218ENST00000640408 WIZO95785 1651 aa9□□□□□ -0.97
RTTN-218ENST00000640408 CCDC88BA6NC98 1476 aa8.99□□□□□ -0.97
RTTN-218ENST00000640408 CEP164Q9UPV0 1460 aa8.95□□□□□ -0.98
RTTN-218ENST00000640408 LAMC3Q9Y6N6 1575 aa8.95□□□□□ -0.98
RTTN-218ENST00000640408 CFTRP13569 1480 aa8.95□□□□□ -0.98
RTTN-218ENST00000640408 FANCD2Q9BXW9 1451 aa8.92□□□□□ -0.98
RTTN-218ENST00000640408 WRNQ14191 1432 aaPredicted RBP eCLIP8.91□□□□□ -0.98
RTTN-218ENST00000640408 CHIC1Q5VXU3 224 aa8.86□□□□□ -0.99
RTTN-218ENST00000640408 MRC2Q9UBG0 1479 aa8.85□□□□□ -0.99
RTTN-218ENST00000640408 EEA1Q15075 1411 aa8.84□□□□□ -0.99
RTTN-218ENST00000640408 KIF27Q86VH2 1401 aa8.82□□□□□ -1
RTTN-218ENST00000640408 SOGA1O94964 1423 aa8.81□□□□□ -1
RTTN-218ENST00000640408 CHMP7Q8WUX9 453 aaPredicted RBP8.8□□□□□ -1
RTTN-218ENST00000640408 UBTFP17480 764 aaKnown RBP8.8□□□□□ -1
RTTN-218ENST00000640408 FBLN2P98095 1184 aa8.8□□□□□ -1
RTTN-218ENST00000640408 NESP48681 1621 aa8.8□□□□□ -1
RTTN-218ENST00000640408 CSRNP3Q8WYN3 585 aa8.79□□□□□ -1
RTTN-218ENST00000640408 CUX2O14529 1486 aa8.78□□□□□ -1
RTTN-218ENST00000640408 TTBK1Q5TCY1 1321 aaPredicted RBP8.77□□□□□ -1.01
RTTN-218ENST00000640408 IFT140Q96RY7 1462 aa8.77□□□□□ -1.01
RTTN-218ENST00000640408 APLP2Q06481 763 aa8.76□□□□□ -1.01
RTTN-218ENST00000640408 DNMBPQ6XZF7 1577 aa8.73□□□□□ -1.01
RTTN-218ENST00000640408 TOPBP1Q92547 1522 aa8.73□□□□□ -1.01
RTTN-218ENST00000640408 TDRD9Q8NDG6 1382 aaKnown RBP8.69□□□□□ -1.02
RTTN-218ENST00000640408 FGD5Q6ZNL6 1462 aa8.69□□□□□ -1.02
RTTN-218ENST00000640408 OSCARQ8IYS5 282 aa8.69□□□□□ -1.02
RTTN-218ENST00000640408 CENPBP07199 599 aaPredicted RBP8.67□□□□□ -1.02
RTTN-218ENST00000640408 GRIN2BQ13224 1484 aa8.67□□□□□ -1.02
RTTN-218ENST00000640408 NPM1P06748 294 aaKnown RBP eCLIP8.66□□□□□ -1.02
RTTN-218ENST00000640408 CARMIL1Q5VZK9 1371 aa8.66□□□□□ -1.02
RTTN-218ENST00000640408 GAPVD1Q14C86 1478 aa8.66□□□□□ -1.02
RTTN-218ENST00000640408 POLA1P09884 1462 aaPredicted RBP8.66□□□□□ -1.02
RTTN-218ENST00000640408 URB2Q14146 1524 aaKnown RBP8.64□□□□□ -1.03
RTTN-218ENST00000640408 WDR62O43379 1518 aa8.64□□□□□ -1.03
RTTN-218ENST00000640408 ABCA10Q8WWZ4 1543 aa8.62□□□□□ -1.03
RTTN-218ENST00000640408 TOP2BQ02880 1626 aa8.62□□□□□ -1.03
RTTN-218ENST00000640408 FHAD1B1AJZ9 1412 aa8.61□□□□□ -1.03
RTTN-218ENST00000640408 EHMT2Q96KQ7 1210 aa8.61□□□□□ -1.03
RTTN-218ENST00000640408 CUX1P39880 1505 aa8.61□□□□□ -1.03
RTTN-218ENST00000640408 ERICH6Q7L0X2 663 aa8.6□□□□□ -1.03
RTTN-218ENST00000640408 CDK11AQ9UQ88 783 aaPredicted RBP8.6□□□□□ -1.03
RTTN-218ENST00000640408 CARMIL2Q6F5E8 1435 aa8.6□□□□□ -1.03
RTTN-218ENST00000640408 RAD54L2Q9Y4B4 1467 aa8.59□□□□□ -1.03
RTTN-218ENST00000640408 MAGI1Q96QZ7 1491 aaPredicted RBP8.59□□□□□ -1.03
RTTN-218ENST00000640408 WDR97A6NE52 1622 aa8.59□□□□□ -1.03
RTTN-218ENST00000640408 ATP1B4Q9UN42 357 aaPredicted RBP8.58□□□□□ -1.04
RTTN-218ENST00000640408 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.58□□□□□ -1.04
RTTN-218ENST00000640408 RANGAP1P46060 587 aaPredicted RBP8.58□□□□□ -1.04
RTTN-218ENST00000640408 HNRNPUL2Q1KMD3 747 aaKnown RBP8.58□□□□□ -1.04
RTTN-218ENST00000640408 PRDM2Q13029 1718 aa8.58□□□□□ -1.04
RTTN-218ENST00000640408 AQRO60306 1485 aaKnown RBP eCLIP8.57□□□□□ -1.04
RTTN-218ENST00000640408 GOLGA3Q08378 1498 aa8.57□□□□□ -1.04
RTTN-218ENST00000640408 RAPGEF2Q9Y4G8 1499 aa8.57□□□□□ -1.04
RTTN-218ENST00000640408 IGF1RP08069 1367 aa8.57□□□□□ -1.04
RTTN-218ENST00000640408 CCER1Q8TC90 406 aaPredicted RBP8.55□□□□□ -1.04
RTTN-218ENST00000640408 JPH4Q96JJ6 628 aa8.54□□□□□ -1.04
RTTN-218ENST00000640408 ZEB1P37275 1124 aaPredicted RBP8.54□□□□□ -1.04
RTTN-218ENST00000640408 ERICH3Q5RHP9 1530 aa8.54□□□□□ -1.04
RTTN-218ENST00000640408 KIF21AQ7Z4S6 1674 aa8.54□□□□□ -1.04
RTTN-218ENST00000640408 SYNJ1O43426 1573 aa8.53□□□□□ -1.04
RTTN-218ENST00000640408 SYNJ2O15056 1496 aa8.53□□□□□ -1.04
RTTN-218ENST00000640408 BIVM-ERCC5R4GMW8 1640 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms