RNA–Protein interactions for RNA: ENST00000636405.1

CLN5-209, Transcript of CLN5, intracellular trafficking protein, humanhuman

Gene CLN5, Length 2,511 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN5-209ENST00000636405 NISCHQ9Y2I1 1504 aa32.03■■■□□ 2.72
CLN5-209ENST00000636405 CCDC180Q9P1Z9 1646 aa27.29■■□□□ 1.96
CLN5-209ENST00000636405 SHROOM4Q9ULL8 1493 aa27.24■■□□□ 1.95
CLN5-209ENST00000636405 ZCCHC6Q5VYS8 1495 aaKnown RBP26.99■■□□□ 1.91
CLN5-209ENST00000636405 DCAF8L2P0C7V8 631 aa26.93■■□□□ 1.9
CLN5-209ENST00000636405 SUPT5HO00267 1087 aaKnown RBP26.52■■□□□ 1.84
CLN5-209ENST00000636405 DCAF1Q9Y4B6 1507 aa26.17■■□□□ 1.78
CLN5-209ENST00000636405 ABCC9O60706 1549 aa25.87■■□□□ 1.73
CLN5-209ENST00000636405 SCRIBQ14160 1630 aa25.69■■□□□ 1.7
CLN5-209ENST00000636405 MYO15BQ96JP2 1530 aa25.55■■□□□ 1.68
CLN5-209ENST00000636405 CHIC1Q5VXU3 224 aa25.51■■□□□ 1.67
CLN5-209ENST00000636405 NACADO15069 1562 aa25.38■■□□□ 1.65
CLN5-209ENST00000636405 RSF1Q96T23 1441 aaPredicted RBP25.25■■□□□ 1.63
CLN5-209ENST00000636405 CECR2Q9BXF3 1484 aa25.12■■□□□ 1.61
CLN5-209ENST00000636405 RB1CC1Q8TDY2 1594 aa25.08■■□□□ 1.61
CLN5-209ENST00000636405 MROH2BQ7Z745 1585 aa24.94■■□□□ 1.58
CLN5-209ENST00000636405 LOC105371045A0A1W2PR82 267 aa24.84■■□□□ 1.57
CLN5-209ENST00000636405 WIZO95785 1651 aa24.78■■□□□ 1.56
CLN5-209ENST00000636405 PABPN1Q86U42 306 aaKnown RBP eCLIP24.74■■□□□ 1.55
CLN5-209ENST00000636405 UNC13AQ9UPW8 1703 aa24.69■■□□□ 1.54
CLN5-209ENST00000636405 TRIM41Q8WV44 630 aa24.66■■□□□ 1.54
CLN5-209ENST00000636405 BAZ1AQ9NRL2 1556 aaPredicted RBP24.6■■□□□ 1.53
CLN5-209ENST00000636405 FAM9AQ8IZU1 332 aaPredicted RBP24.56■■□□□ 1.52
CLN5-209ENST00000636405 SMARCA4P51532 1647 aa24.46■■□□□ 1.51
CLN5-209ENST00000636405 BICRAQ9NZM4 1560 aa24.46■■□□□ 1.51
CLN5-209ENST00000636405 EHMT2Q96KQ7 1210 aa24.45■■□□□ 1.5
CLN5-209ENST00000636405 PCGF6Q9BYE7 350 aa24.37■■□□□ 1.49
CLN5-209ENST00000636405 TOP2AP11388 1531 aaKnown RBP24.31■■□□□ 1.48
CLN5-209ENST00000636405 CCDC88BA6NC98 1476 aa24.29■■□□□ 1.48
CLN5-209ENST00000636405 SMARCA2P51531 1590 aa24.2■■□□□ 1.46
CLN5-209ENST00000636405 EIF4G1Q04637 1599 aaKnown RBP24.17■■□□□ 1.46
CLN5-209ENST00000636405 ABCC8Q09428 1581 aa24.12■■□□□ 1.45
CLN5-209ENST00000636405 HRCP23327 699 aa23.98■■□□□ 1.43
CLN5-209ENST00000636405 ATAD2BQ9ULI0 1458 aa23.98■■□□□ 1.43
CLN5-209ENST00000636405 PEG3Q9GZU2 1588 aa23.94■■□□□ 1.42
CLN5-209ENST00000636405 TRIM26Q12899 539 aaPredicted RBP23.89■■□□□ 1.42
CLN5-209ENST00000636405 BAZ1BQ9UIG0 1483 aaKnown RBP23.88■■□□□ 1.41
CLN5-209ENST00000636405 SOGA1O94964 1423 aa23.84■■□□□ 1.41
CLN5-209ENST00000636405 PPARGC1BQ86YN6 1023 aaKnown RBP23.81■■□□□ 1.4
CLN5-209ENST00000636405 RUSC2Q8N2Y8 1516 aa23.76■■□□□ 1.39
CLN5-209ENST00000636405 WRNQ14191 1432 aaPredicted RBP eCLIP23.72■■□□□ 1.39
CLN5-209ENST00000636405 CSRNP3Q8WYN3 585 aa23.65■■□□□ 1.38
CLN5-209ENST00000636405 SYNJ1O43426 1573 aa23.61■■□□□ 1.37
CLN5-209ENST00000636405 UBTFP17480 764 aaKnown RBP23.58■■□□□ 1.37
CLN5-209ENST00000636405 NCAPD3P42695 1498 aa23.54■■□□□ 1.36
CLN5-209ENST00000636405 TTBK1Q5TCY1 1321 aaPredicted RBP23.52■■□□□ 1.36
CLN5-209ENST00000636405 CEP162Q5TB80 1403 aa23.48■■□□□ 1.35
CLN5-209ENST00000636405 EEA1Q15075 1411 aa23.48■■□□□ 1.35
CLN5-209ENST00000636405 HMGXB3Q12766 1538 aa23.45■■□□□ 1.34
CLN5-209ENST00000636405 TNIKQ9UKE5 1360 aa23.44■■□□□ 1.34
CLN5-209ENST00000636405 GOLGA3Q08378 1498 aa23.36■■□□□ 1.33
CLN5-209ENST00000636405 RANGAP1P46060 587 aaPredicted RBP23.35■■□□□ 1.33
CLN5-209ENST00000636405 TOP2BQ02880 1626 aa23.29■■□□□ 1.32
CLN5-209ENST00000636405 CEP164Q9UPV0 1460 aa23.26■■□□□ 1.31
CLN5-209ENST00000636405 CFTRP13569 1480 aa23.26■■□□□ 1.31
CLN5-209ENST00000636405 RAPGEF2Q9Y4G8 1499 aa23.24■■□□□ 1.31
CLN5-209ENST00000636405 CUX1P39880 1505 aa23.23■■□□□ 1.31
CLN5-209ENST00000636405 CC2D2AQ9P2K1 1620 aa23.21■■□□□ 1.31
CLN5-209ENST00000636405 KIF21BO75037 1637 aa23.18■■□□□ 1.3
CLN5-209ENST00000636405 BIVM-ERCC5R4GMW8 1640 aa23.18■■□□□ 1.3
CLN5-209ENST00000636405 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.15■■□□□ 1.3
CLN5-209ENST00000636405 CLIP1P30622 1438 aa23.14■■□□□ 1.29
CLN5-209ENST00000636405 CADPSQ9ULU8 1353 aa23.12■■□□□ 1.29
CLN5-209ENST00000636405 ZEB1P37275 1124 aaPredicted RBP23.09■■□□□ 1.29
CLN5-209ENST00000636405 KIF27Q86VH2 1401 aa23.01■■□□□ 1.27
CLN5-209ENST00000636405 CCER1Q8TC90 406 aaPredicted RBP23■■□□□ 1.27
CLN5-209ENST00000636405 PRXQ9BXM0 1461 aa23■■□□□ 1.27
CLN5-209ENST00000636405 DNAJC5BQ9UF47 199 aa22.97■■□□□ 1.27
CLN5-209ENST00000636405 VPS8Q8N3P4 1428 aa22.94■■□□□ 1.26
CLN5-209ENST00000636405 NESP48681 1621 aa22.94■■□□□ 1.26
CLN5-209ENST00000636405 CUX2O14529 1486 aa22.92■■□□□ 1.26
CLN5-209ENST00000636405 APLP2Q06481 763 aa22.9■■□□□ 1.26
CLN5-209ENST00000636405 PRDM2Q13029 1718 aa22.89■■□□□ 1.26
CLN5-209ENST00000636405 FANCD2Q9BXW9 1451 aa22.89■■□□□ 1.25
CLN5-209ENST00000636405 FGD5Q6ZNL6 1462 aa22.88■■□□□ 1.25
CLN5-209ENST00000636405 ERICH3Q5RHP9 1530 aa22.88■■□□□ 1.25
CLN5-209ENST00000636405 HNRNPUL2Q1KMD3 747 aaKnown RBP22.85■■□□□ 1.25
CLN5-209ENST00000636405 IGF1RP08069 1367 aa22.85■■□□□ 1.25
CLN5-209ENST00000636405 ARAP1Q96P48 1450 aa22.8■■□□□ 1.24
CLN5-209ENST00000636405 RAD54L2Q9Y4B4 1467 aa22.77■■□□□ 1.24
CLN5-209ENST00000636405 KANK4Q5T7N3 995 aaPredicted RBP22.74■■□□□ 1.23
CLN5-209ENST00000636405 CARMIL1Q5VZK9 1371 aa22.74■■□□□ 1.23
CLN5-209ENST00000636405 TOPBP1Q92547 1522 aa22.68■■□□□ 1.22
CLN5-209ENST00000636405 ARHGAP35Q9NRY4 1499 aa22.68■■□□□ 1.22
CLN5-209ENST00000636405 POLA1P09884 1462 aaPredicted RBP22.66■■□□□ 1.22
CLN5-209ENST00000636405 DNMBPQ6XZF7 1577 aa22.65■■□□□ 1.22
CLN5-209ENST00000636405 P3H3Q8IVL6 736 aa22.64■■□□□ 1.21
CLN5-209ENST00000636405 URB2Q14146 1524 aaKnown RBP22.59■■□□□ 1.21
CLN5-209ENST00000636405 LAMC3Q9Y6N6 1575 aa22.56■■□□□ 1.2
CLN5-209ENST00000636405 ABCA10Q8WWZ4 1543 aa22.55■■□□□ 1.2
CLN5-209ENST00000636405 TDRD9Q8NDG6 1382 aaKnown RBP22.55■■□□□ 1.2
CLN5-209ENST00000636405 ATP1B4Q9UN42 357 aaPredicted RBP22.5■■□□□ 1.19
CLN5-209ENST00000636405 PDS5BQ9NTI5 1447 aa22.49■■□□□ 1.19
CLN5-209ENST00000636405 ITGAEP38570 1179 aa22.45■■□□□ 1.18
CLN5-209ENST00000636405 KIF21AQ7Z4S6 1674 aa22.42■■□□□ 1.18
CLN5-209ENST00000636405 FHOD3Q2V2M9 1422 aa22.4■■□□□ 1.18
CLN5-209ENST00000636405 GAPVD1Q14C86 1478 aa22.35■■□□□ 1.17
CLN5-209ENST00000636405 RRBP1Q9P2E9 1410 aaKnown RBP22.32■■□□□ 1.16
CLN5-209ENST00000636405 CCNB3Q8WWL7 1395 aa22.32■■□□□ 1.16
CLN5-209ENST00000636405 WDR97A6NE52 1622 aa22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms