RNA–Protein interactions for RNA: ENST00000623529.1

LINC01561-202, Transcript of long intergenic non-protein coding RNA 1561, humanhuman

Gene LINC01561, Length 2,160 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01561-202ENST00000623529 NISCHQ9Y2I1 1504 aa23.21■■□□□ 1.31
LINC01561-202ENST00000623529 CCDC180Q9P1Z9 1646 aa20.21■□□□□ 0.83
LINC01561-202ENST00000623529 ABCC9O60706 1549 aa19.84■□□□□ 0.77
LINC01561-202ENST00000623529 ZCCHC6Q5VYS8 1495 aaKnown RBP19.42■□□□□ 0.7
LINC01561-202ENST00000623529 DNAJC5BQ9UF47 199 aa19.41■□□□□ 0.7
LINC01561-202ENST00000623529 DCAF8L2P0C7V8 631 aa19.37■□□□□ 0.69
LINC01561-202ENST00000623529 DCAF1Q9Y4B6 1507 aa19.12■□□□□ 0.65
LINC01561-202ENST00000623529 MYO15BQ96JP2 1530 aa18.97■□□□□ 0.63
LINC01561-202ENST00000623529 NACADO15069 1562 aa18.93■□□□□ 0.62
LINC01561-202ENST00000623529 SHROOM4Q9ULL8 1493 aa18.87■□□□□ 0.61
LINC01561-202ENST00000623529 RB1CC1Q8TDY2 1594 aa18.82■□□□□ 0.6
LINC01561-202ENST00000623529 SCRIBQ14160 1630 aa18.66■□□□□ 0.58
LINC01561-202ENST00000623529 UNC13AQ9UPW8 1703 aa18.46■□□□□ 0.55
LINC01561-202ENST00000623529 DNAJC5Q9H3Z4 198 aa18.44■□□□□ 0.54
LINC01561-202ENST00000623529 PABPN1Q86U42 306 aaKnown RBP eCLIP18.41■□□□□ 0.54
LINC01561-202ENST00000623529 BICRAQ9NZM4 1560 aa18.33■□□□□ 0.53
LINC01561-202ENST00000623529 CECR2Q9BXF3 1484 aa18.13■□□□□ 0.49
LINC01561-202ENST00000623529 SUPT5HO00267 1087 aaKnown RBP18.06■□□□□ 0.48
LINC01561-202ENST00000623529 RSF1Q96T23 1441 aaPredicted RBP17.96■□□□□ 0.47
LINC01561-202ENST00000623529 MROH2BQ7Z745 1585 aa17.96■□□□□ 0.47
LINC01561-202ENST00000623529 BAZ1AQ9NRL2 1556 aaPredicted RBP17.89■□□□□ 0.45
LINC01561-202ENST00000623529 CC2D2AQ9P2K1 1620 aa17.85■□□□□ 0.45
LINC01561-202ENST00000623529 SMARCA4P51532 1647 aa17.85■□□□□ 0.45
LINC01561-202ENST00000623529 WIZO95785 1651 aa17.77■□□□□ 0.44
LINC01561-202ENST00000623529 EIF4G1Q04637 1599 aaKnown RBP17.77■□□□□ 0.43
LINC01561-202ENST00000623529 ATAD2BQ9ULI0 1458 aa17.66■□□□□ 0.42
LINC01561-202ENST00000623529 PEG3Q9GZU2 1588 aa17.63■□□□□ 0.41
LINC01561-202ENST00000623529 SMARCA2P51531 1590 aa17.57■□□□□ 0.4
LINC01561-202ENST00000623529 NCAPD3P42695 1498 aa17.54■□□□□ 0.4
LINC01561-202ENST00000623529 TOP2AP11388 1531 aaKnown RBP17.52■□□□□ 0.4
LINC01561-202ENST00000623529 BAZ1BQ9UIG0 1483 aaKnown RBP17.51■□□□□ 0.39
LINC01561-202ENST00000623529 CUX2O14529 1486 aa17.45■□□□□ 0.38
LINC01561-202ENST00000623529 CCDC88BA6NC98 1476 aa17.43■□□□□ 0.38
LINC01561-202ENST00000623529 HMGXB3Q12766 1538 aa17.42■□□□□ 0.38
LINC01561-202ENST00000623529 TRIM41Q8WV44 630 aa17.28■□□□□ 0.36
LINC01561-202ENST00000623529 ERCC6Q03468 1493 aa17.2■□□□□ 0.34
LINC01561-202ENST00000623529 CHIC1Q5VXU3 224 aa17.17■□□□□ 0.34
LINC01561-202ENST00000623529 CADPSQ9ULU8 1353 aa17.1■□□□□ 0.33
LINC01561-202ENST00000623529 CFTRP13569 1480 aa17.09■□□□□ 0.33
LINC01561-202ENST00000623529 NESP48681 1621 aa17.05■□□□□ 0.32
LINC01561-202ENST00000623529 ABCC8Q09428 1581 aa16.98■□□□□ 0.31
LINC01561-202ENST00000623529 LAMC3Q9Y6N6 1575 aa16.91■□□□□ 0.3
LINC01561-202ENST00000623529 FANCD2Q9BXW9 1451 aa16.88■□□□□ 0.29
LINC01561-202ENST00000623529 WRNQ14191 1432 aaPredicted RBP eCLIP16.87■□□□□ 0.29
LINC01561-202ENST00000623529 PRDM2Q13029 1718 aa16.85■□□□□ 0.29
LINC01561-202ENST00000623529 PDS5BQ9NTI5 1447 aa16.83■□□□□ 0.28
LINC01561-202ENST00000623529 SYNJ1O43426 1573 aa16.81■□□□□ 0.28
LINC01561-202ENST00000623529 CUX1P39880 1505 aa16.78■□□□□ 0.28
LINC01561-202ENST00000623529 THOC2Q8NI27 1593 aaKnown RBP16.76■□□□□ 0.27
LINC01561-202ENST00000623529 CEP164Q9UPV0 1460 aa16.75■□□□□ 0.27
LINC01561-202ENST00000623529 KIF21AQ7Z4S6 1674 aa16.75■□□□□ 0.27
LINC01561-202ENST00000623529 TOP2BQ02880 1626 aa16.72■□□□□ 0.27
LINC01561-202ENST00000623529 URB2Q14146 1524 aaKnown RBP16.7■□□□□ 0.26
LINC01561-202ENST00000623529 FAM9AQ8IZU1 332 aaPredicted RBP16.7■□□□□ 0.26
LINC01561-202ENST00000623529 BIVM-ERCC5R4GMW8 1640 aa16.68■□□□□ 0.26
LINC01561-202ENST00000623529 TOPBP1Q92547 1522 aa16.67■□□□□ 0.26
LINC01561-202ENST00000623529 SOGA1O94964 1423 aa16.66■□□□□ 0.26
LINC01561-202ENST00000623529 RUSC2Q8N2Y8 1516 aa16.64■□□□□ 0.25
LINC01561-202ENST00000623529 DNMBPQ6XZF7 1577 aa16.63■□□□□ 0.25
LINC01561-202ENST00000623529 FGD5Q6ZNL6 1462 aa16.62■□□□□ 0.25
LINC01561-202ENST00000623529 MRC2Q9UBG0 1479 aa16.61■□□□□ 0.25
LINC01561-202ENST00000623529 POLA1P09884 1462 aaPredicted RBP16.58■□□□□ 0.24
LINC01561-202ENST00000623529 RAD54L2Q9Y4B4 1467 aa16.57■□□□□ 0.24
LINC01561-202ENST00000623529 LOC105371045A0A1W2PR82 267 aa16.57■□□□□ 0.24
LINC01561-202ENST00000623529 OSCARQ8IYS5 282 aa16.57■□□□□ 0.24
LINC01561-202ENST00000623529 WDR62O43379 1518 aa16.53■□□□□ 0.24
LINC01561-202ENST00000623529 CSRNP3Q8WYN3 585 aa16.51■□□□□ 0.23
LINC01561-202ENST00000623529 EHMT2Q96KQ7 1210 aa16.5■□□□□ 0.23
LINC01561-202ENST00000623529 AEBP2Q6ZN18 517 aaPredicted RBP16.48■□□□□ 0.23
LINC01561-202ENST00000623529 TDRD9Q8NDG6 1382 aaKnown RBP16.45■□□□□ 0.22
LINC01561-202ENST00000623529 ABCA10Q8WWZ4 1543 aa16.45■□□□□ 0.22
LINC01561-202ENST00000623529 EEA1Q15075 1411 aa16.44■□□□□ 0.22
LINC01561-202ENST00000623529 KIF27Q86VH2 1401 aa16.44■□□□□ 0.22
LINC01561-202ENST00000623529 TARBP1Q13395 1621 aaKnown RBP16.43■□□□□ 0.22
LINC01561-202ENST00000623529 IGF1RP08069 1367 aa16.41■□□□□ 0.22
LINC01561-202ENST00000623529 AQRO60306 1485 aaKnown RBP eCLIP16.38■□□□□ 0.21
LINC01561-202ENST00000623529 ZNF608Q9ULD9 1512 aaPredicted RBP16.38■□□□□ 0.21
LINC01561-202ENST00000623529 IFT140Q96RY7 1462 aa16.37■□□□□ 0.21
LINC01561-202ENST00000623529 WDR97A6NE52 1622 aa16.36■□□□□ 0.21
LINC01561-202ENST00000623529 RIMBP3CA6NJZ7 1639 aa16.36■□□□□ 0.21
LINC01561-202ENST00000623529 RIMBP3BA6NNM3 1639 aa16.36■□□□□ 0.21
LINC01561-202ENST00000623529 RIMBP3Q9UFD9 1639 aa16.36■□□□□ 0.21
LINC01561-202ENST00000623529 GAPVD1Q14C86 1478 aa16.33■□□□□ 0.2
LINC01561-202ENST00000623529 TRHP20396 242 aaPredicted RBP16.33■□□□□ 0.2
LINC01561-202ENST00000623529 PRXQ9BXM0 1461 aa16.31■□□□□ 0.2
LINC01561-202ENST00000623529 ABCA5Q8WWZ7 1642 aa16.31■□□□□ 0.2
LINC01561-202ENST00000623529 MYT1Q01538 1121 aa16.3■□□□□ 0.2
LINC01561-202ENST00000623529 RAPGEF2Q9Y4G8 1499 aa16.3■□□□□ 0.2
LINC01561-202ENST00000623529 CARMIL1Q5VZK9 1371 aa16.29■□□□□ 0.2
LINC01561-202ENST00000623529 UBTFP17480 764 aaKnown RBP16.27■□□□□ 0.2
LINC01561-202ENST00000623529 KIF21BO75037 1637 aa16.24■□□□□ 0.19
LINC01561-202ENST00000623529 ARHGEF11O15085 1522 aa16.23■□□□□ 0.19
LINC01561-202ENST00000623529 CYB5RLQ6IPT4 315 aa16.23■□□□□ 0.19
LINC01561-202ENST00000623529 GOLGA3Q08378 1498 aa16.23■□□□□ 0.19
LINC01561-202ENST00000623529 ERICH3Q5RHP9 1530 aa16.23■□□□□ 0.19
LINC01561-202ENST00000623529 PELP1Q8IZL8 1130 aaKnown RBP16.22■□□□□ 0.19
LINC01561-202ENST00000623529 EIF4G3O43432 1585 aaKnown RBP16.22■□□□□ 0.19
LINC01561-202ENST00000623529 GRIN2BQ13224 1484 aa16.22■□□□□ 0.19
LINC01561-202ENST00000623529 TNIKQ9UKE5 1360 aa16.19■□□□□ 0.18
LINC01561-202ENST00000623529 PBRM1Q86U86 1689 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms