RNA–Protein interactions for RNA: ENST00000619035.4

TNFAIP3-209, Transcript of TNF alpha induced protein 3, humanhuman

TSL 5 BASIC

Gene TNFAIP3, Length 2,267 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFAIP3-209ENST00000619035 NISCHQ9Y2I1 1504 aa28.56■■■□□ 2.16
TNFAIP3-209ENST00000619035 CCDC180Q9P1Z9 1646 aa24.98■■□□□ 1.59
TNFAIP3-209ENST00000619035 ZCCHC6Q5VYS8 1495 aaKnown RBP23.99■■□□□ 1.43
TNFAIP3-209ENST00000619035 DCAF1Q9Y4B6 1507 aa23.72■■□□□ 1.39
TNFAIP3-209ENST00000619035 DCAF8L2P0C7V8 631 aa23.68■■□□□ 1.38
TNFAIP3-209ENST00000619035 MYO15BQ96JP2 1530 aa23.48■■□□□ 1.35
TNFAIP3-209ENST00000619035 SHROOM4Q9ULL8 1493 aa23.46■■□□□ 1.35
TNFAIP3-209ENST00000619035 ABCC9O60706 1549 aa23.45■■□□□ 1.34
TNFAIP3-209ENST00000619035 NACADO15069 1562 aa23.26■■□□□ 1.31
TNFAIP3-209ENST00000619035 RB1CC1Q8TDY2 1594 aa23.04■■□□□ 1.28
TNFAIP3-209ENST00000619035 SCRIBQ14160 1630 aa22.87■■□□□ 1.25
TNFAIP3-209ENST00000619035 SUPT5HO00267 1087 aaKnown RBP22.6■■□□□ 1.21
TNFAIP3-209ENST00000619035 UNC13AQ9UPW8 1703 aa22.51■■□□□ 1.19
TNFAIP3-209ENST00000619035 BICRAQ9NZM4 1560 aa22.28■■□□□ 1.16
TNFAIP3-209ENST00000619035 PABPN1Q86U42 306 aaKnown RBP eCLIP22.17■■□□□ 1.14
TNFAIP3-209ENST00000619035 CECR2Q9BXF3 1484 aa22.16■■□□□ 1.14
TNFAIP3-209ENST00000619035 RSF1Q96T23 1441 aaPredicted RBP22.12■■□□□ 1.13
TNFAIP3-209ENST00000619035 BAZ1AQ9NRL2 1556 aaPredicted RBP22.09■■□□□ 1.13
TNFAIP3-209ENST00000619035 MROH2BQ7Z745 1585 aa22.02■■□□□ 1.12
TNFAIP3-209ENST00000619035 SMARCA4P51532 1647 aa21.95■■□□□ 1.1
TNFAIP3-209ENST00000619035 WIZO95785 1651 aa21.86■■□□□ 1.09
TNFAIP3-209ENST00000619035 PEG3Q9GZU2 1588 aa21.75■■□□□ 1.07
TNFAIP3-209ENST00000619035 TOP2AP11388 1531 aaKnown RBP21.66■■□□□ 1.06
TNFAIP3-209ENST00000619035 SMARCA2P51531 1590 aa21.63■■□□□ 1.05
TNFAIP3-209ENST00000619035 EIF4G1Q04637 1599 aaKnown RBP21.62■■□□□ 1.05
TNFAIP3-209ENST00000619035 ATAD2BQ9ULI0 1458 aa21.59■■□□□ 1.05
TNFAIP3-209ENST00000619035 CHIC1Q5VXU3 224 aa21.58■■□□□ 1.05
TNFAIP3-209ENST00000619035 BAZ1BQ9UIG0 1483 aaKnown RBP21.46■■□□□ 1.03
TNFAIP3-209ENST00000619035 NCAPD3P42695 1498 aa21.45■■□□□ 1.02
TNFAIP3-209ENST00000619035 HMGXB3Q12766 1538 aa21.43■■□□□ 1.02
TNFAIP3-209ENST00000619035 CCDC88BA6NC98 1476 aa21.4■■□□□ 1.02
TNFAIP3-209ENST00000619035 CC2D2AQ9P2K1 1620 aa21.29■■□□□ 1
TNFAIP3-209ENST00000619035 TRIM41Q8WV44 630 aa21.18■□□□□ 0.98
TNFAIP3-209ENST00000619035 ABCC8Q09428 1581 aa21.03■□□□□ 0.96
TNFAIP3-209ENST00000619035 CFTRP13569 1480 aa20.95■□□□□ 0.94
TNFAIP3-209ENST00000619035 FAM9AQ8IZU1 332 aaPredicted RBP20.9■□□□□ 0.94
TNFAIP3-209ENST00000619035 PRDM2Q13029 1718 aa20.88■□□□□ 0.93
TNFAIP3-209ENST00000619035 CADPSQ9ULU8 1353 aa20.87■□□□□ 0.93
TNFAIP3-209ENST00000619035 WRNQ14191 1432 aaPredicted RBP eCLIP20.84■□□□□ 0.93
TNFAIP3-209ENST00000619035 LOC105371045A0A1W2PR82 267 aa20.84■□□□□ 0.93
TNFAIP3-209ENST00000619035 SYNJ1O43426 1573 aa20.76■□□□□ 0.91
TNFAIP3-209ENST00000619035 LAMC3Q9Y6N6 1575 aa20.73■□□□□ 0.91
TNFAIP3-209ENST00000619035 TOP2BQ02880 1626 aa20.69■□□□□ 0.9
TNFAIP3-209ENST00000619035 EHMT2Q96KQ7 1210 aa20.69■□□□□ 0.9
TNFAIP3-209ENST00000619035 DNAJC5BQ9UF47 199 aa20.69■□□□□ 0.9
TNFAIP3-209ENST00000619035 BIVM-ERCC5R4GMW8 1640 aa20.68■□□□□ 0.9
TNFAIP3-209ENST00000619035 SOGA1O94964 1423 aa20.64■□□□□ 0.9
TNFAIP3-209ENST00000619035 EEA1Q15075 1411 aa20.63■□□□□ 0.89
TNFAIP3-209ENST00000619035 FANCD2Q9BXW9 1451 aa20.61■□□□□ 0.89
TNFAIP3-209ENST00000619035 NESP48681 1621 aa20.61■□□□□ 0.89
TNFAIP3-209ENST00000619035 CUX1P39880 1505 aa20.59■□□□□ 0.89
TNFAIP3-209ENST00000619035 RUSC2Q8N2Y8 1516 aa20.57■□□□□ 0.88
TNFAIP3-209ENST00000619035 PDS5BQ9NTI5 1447 aa20.56■□□□□ 0.88
TNFAIP3-209ENST00000619035 CEP164Q9UPV0 1460 aa20.5■□□□□ 0.87
TNFAIP3-209ENST00000619035 CSRNP3Q8WYN3 585 aa20.47■□□□□ 0.87
TNFAIP3-209ENST00000619035 DNMBPQ6XZF7 1577 aa20.46■□□□□ 0.87
TNFAIP3-209ENST00000619035 TOPBP1Q92547 1522 aa20.39■□□□□ 0.85
TNFAIP3-209ENST00000619035 KIF21AQ7Z4S6 1674 aa20.38■□□□□ 0.85
TNFAIP3-209ENST00000619035 FGD5Q6ZNL6 1462 aa20.37■□□□□ 0.85
TNFAIP3-209ENST00000619035 KIF27Q86VH2 1401 aa20.34■□□□□ 0.85
TNFAIP3-209ENST00000619035 URB2Q14146 1524 aaKnown RBP20.33■□□□□ 0.85
TNFAIP3-209ENST00000619035 KIF21BO75037 1637 aa20.31■□□□□ 0.84
TNFAIP3-209ENST00000619035 UBTFP17480 764 aaKnown RBP20.3■□□□□ 0.84
TNFAIP3-209ENST00000619035 GOLGA3Q08378 1498 aa20.3■□□□□ 0.84
TNFAIP3-209ENST00000619035 POLA1P09884 1462 aaPredicted RBP20.28■□□□□ 0.84
TNFAIP3-209ENST00000619035 MRC2Q9UBG0 1479 aa20.26■□□□□ 0.83
TNFAIP3-209ENST00000619035 CUX2O14529 1486 aa20.26■□□□□ 0.83
TNFAIP3-209ENST00000619035 ABCA10Q8WWZ4 1543 aa20.25■□□□□ 0.83
TNFAIP3-209ENST00000619035 TNIKQ9UKE5 1360 aa20.23■□□□□ 0.83
TNFAIP3-209ENST00000619035 RAD54L2Q9Y4B4 1467 aa20.21■□□□□ 0.83
TNFAIP3-209ENST00000619035 RAPGEF2Q9Y4G8 1499 aa20.21■□□□□ 0.83
TNFAIP3-209ENST00000619035 PCGF6Q9BYE7 350 aa20.2■□□□□ 0.82
TNFAIP3-209ENST00000619035 ERICH3Q5RHP9 1530 aa20.2■□□□□ 0.82
TNFAIP3-209ENST00000619035 PRXQ9BXM0 1461 aa20.19■□□□□ 0.82
TNFAIP3-209ENST00000619035 CEP162Q5TB80 1403 aa20.18■□□□□ 0.82
TNFAIP3-209ENST00000619035 WDR62O43379 1518 aa20.17■□□□□ 0.82
TNFAIP3-209ENST00000619035 WDR97A6NE52 1622 aa20.16■□□□□ 0.82
TNFAIP3-209ENST00000619035 ERCC6Q03468 1493 aa20.16■□□□□ 0.82
TNFAIP3-209ENST00000619035 IGF1RP08069 1367 aa20.13■□□□□ 0.81
TNFAIP3-209ENST00000619035 TARBP1Q13395 1621 aaKnown RBP20.1■□□□□ 0.81
TNFAIP3-209ENST00000619035 THOC2Q8NI27 1593 aaKnown RBP20.08■□□□□ 0.8
TNFAIP3-209ENST00000619035 ABCA5Q8WWZ7 1642 aa20.06■□□□□ 0.8
TNFAIP3-209ENST00000619035 RANGAP1P46060 587 aaPredicted RBP20.06■□□□□ 0.8
TNFAIP3-209ENST00000619035 IFT140Q96RY7 1462 aa20.04■□□□□ 0.8
TNFAIP3-209ENST00000619035 CARMIL1Q5VZK9 1371 aa20.03■□□□□ 0.8
TNFAIP3-209ENST00000619035 CUL7Q14999 1698 aa20.03■□□□□ 0.8
TNFAIP3-209ENST00000619035 TDRD9Q8NDG6 1382 aaKnown RBP20.02■□□□□ 0.8
TNFAIP3-209ENST00000619035 GAPVD1Q14C86 1478 aa20.01■□□□□ 0.79
TNFAIP3-209ENST00000619035 CLIP1P30622 1438 aa20.01■□□□□ 0.79
TNFAIP3-209ENST00000619035 PPARGC1BQ86YN6 1023 aaKnown RBP19.94■□□□□ 0.78
TNFAIP3-209ENST00000619035 TRIM26Q12899 539 aaPredicted RBP19.91■□□□□ 0.78
TNFAIP3-209ENST00000619035 PBRM1Q86U86 1689 aa19.9■□□□□ 0.78
TNFAIP3-209ENST00000619035 GRIN2BQ13224 1484 aa19.88■□□□□ 0.77
TNFAIP3-209ENST00000619035 AQRO60306 1485 aaKnown RBP eCLIP19.87■□□□□ 0.779e-7■■■■□ 24.2
TNFAIP3-209ENST00000619035 ZNF608Q9ULD9 1512 aaPredicted RBP19.83■□□□□ 0.76
TNFAIP3-209ENST00000619035 FHAD1B1AJZ9 1412 aa19.82■□□□□ 0.76
TNFAIP3-209ENST00000619035 VPS8Q8N3P4 1428 aa19.82■□□□□ 0.76
TNFAIP3-209ENST00000619035 HRCP23327 699 aa19.81■□□□□ 0.76
TNFAIP3-209ENST00000619035 TTBK1Q5TCY1 1321 aaPredicted RBP19.81■□□□□ 0.76
TNFAIP3-209ENST00000619035 EIF4G3O43432 1585 aaKnown RBP19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms