RNA–Protein interactions for RNA: ENST00000618137.1

NLRC3-205, Transcript of NLR family CARD domain containing 3, humanhuman

TSL 1 (best)

Gene NLRC3, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NLRC3-205ENST00000618137 NISCHQ9Y2I1 1504 aa29.21■■■□□ 2.27
NLRC3-205ENST00000618137 CCDC180Q9P1Z9 1646 aa25.92■■□□□ 1.74
NLRC3-205ENST00000618137 ABCC9O60706 1549 aa25.15■■□□□ 1.62
NLRC3-205ENST00000618137 ZCCHC6Q5VYS8 1495 aaKnown RBP24.38■■□□□ 1.49
NLRC3-205ENST00000618137 NACADO15069 1562 aa24.36■■□□□ 1.49
NLRC3-205ENST00000618137 RB1CC1Q8TDY2 1594 aa24.33■■□□□ 1.49
NLRC3-205ENST00000618137 MYO15BQ96JP2 1530 aa24.31■■□□□ 1.48
NLRC3-205ENST00000618137 DCAF8L2P0C7V8 631 aa24.28■■□□□ 1.48
NLRC3-205ENST00000618137 DCAF1Q9Y4B6 1507 aa24.24■■□□□ 1.47
NLRC3-205ENST00000618137 UNC13AQ9UPW8 1703 aa23.67■■□□□ 1.38
NLRC3-205ENST00000618137 SCRIBQ14160 1630 aa23.59■■□□□ 1.37
NLRC3-205ENST00000618137 BICRAQ9NZM4 1560 aa23.54■■□□□ 1.36
NLRC3-205ENST00000618137 PABPN1Q86U42 306 aaKnown RBP eCLIP23.51■■□□□ 1.35
NLRC3-205ENST00000618137 SHROOM4Q9ULL8 1493 aa23.44■■□□□ 1.34
NLRC3-205ENST00000618137 EIF4G1Q04637 1599 aaKnown RBP22.93■■□□□ 1.26
NLRC3-205ENST00000618137 DNAJC5BQ9UF47 199 aa22.91■■□□□ 1.26
NLRC3-205ENST00000618137 CC2D2AQ9P2K1 1620 aa22.78■■□□□ 1.24
NLRC3-205ENST00000618137 CECR2Q9BXF3 1484 aa22.69■■□□□ 1.22
NLRC3-205ENST00000618137 BAZ1AQ9NRL2 1556 aaPredicted RBP22.66■■□□□ 1.22
NLRC3-205ENST00000618137 SMARCA4P51532 1647 aa22.62■■□□□ 1.21
NLRC3-205ENST00000618137 SMARCA2P51531 1590 aa22.49■■□□□ 1.19
NLRC3-205ENST00000618137 MROH2BQ7Z745 1585 aa22.48■■□□□ 1.19
NLRC3-205ENST00000618137 NCAPD3P42695 1498 aa22.47■■□□□ 1.19
NLRC3-205ENST00000618137 ATAD2BQ9ULI0 1458 aa22.47■■□□□ 1.19
NLRC3-205ENST00000618137 PEG3Q9GZU2 1588 aa22.45■■□□□ 1.18
NLRC3-205ENST00000618137 HMGXB3Q12766 1538 aa22.38■■□□□ 1.17
NLRC3-205ENST00000618137 RSF1Q96T23 1441 aaPredicted RBP22.31■■□□□ 1.16
NLRC3-205ENST00000618137 BAZ1BQ9UIG0 1483 aaKnown RBP22.3■■□□□ 1.16
NLRC3-205ENST00000618137 WIZO95785 1651 aa22.22■■□□□ 1.15
NLRC3-205ENST00000618137 TOP2AP11388 1531 aaKnown RBP22.06■■□□□ 1.12
NLRC3-205ENST00000618137 LAMC3Q9Y6N6 1575 aa21.85■■□□□ 1.09
NLRC3-205ENST00000618137 CADPSQ9ULU8 1353 aa21.81■■□□□ 1.08
NLRC3-205ENST00000618137 SUPT5HO00267 1087 aaKnown RBP21.79■■□□□ 1.08
NLRC3-205ENST00000618137 NESP48681 1621 aa21.79■■□□□ 1.08
NLRC3-205ENST00000618137 CCDC88BA6NC98 1476 aa21.77■■□□□ 1.08
NLRC3-205ENST00000618137 CFTRP13569 1480 aa21.72■■□□□ 1.07
NLRC3-205ENST00000618137 PDS5BQ9NTI5 1447 aa21.72■■□□□ 1.07
NLRC3-205ENST00000618137 ERCC6Q03468 1493 aa21.71■■□□□ 1.07
NLRC3-205ENST00000618137 FANCD2Q9BXW9 1451 aa21.54■■□□□ 1.04
NLRC3-205ENST00000618137 KIF21AQ7Z4S6 1674 aa21.53■■□□□ 1.04
NLRC3-205ENST00000618137 PRDM2Q13029 1718 aa21.52■■□□□ 1.03
NLRC3-205ENST00000618137 CEP164Q9UPV0 1460 aa21.52■■□□□ 1.03
NLRC3-205ENST00000618137 CUX2O14529 1486 aa21.47■■□□□ 1.03
NLRC3-205ENST00000618137 THOC2Q8NI27 1593 aaKnown RBP21.47■■□□□ 1.03
NLRC3-205ENST00000618137 MRC2Q9UBG0 1479 aa21.45■■□□□ 1.02
NLRC3-205ENST00000618137 WDR62O43379 1518 aa21.38■■□□□ 1.01
NLRC3-205ENST00000618137 URB2Q14146 1524 aaKnown RBP21.29■■□□□ 1
NLRC3-205ENST00000618137 ABCC8Q09428 1581 aa21.29■■□□□ 1
NLRC3-205ENST00000618137 TOPBP1Q92547 1522 aa21.21■□□□□ 0.99
NLRC3-205ENST00000618137 DNMBPQ6XZF7 1577 aa21.21■□□□□ 0.99
NLRC3-205ENST00000618137 CUX1P39880 1505 aa21.09■□□□□ 0.97
NLRC3-205ENST00000618137 IFT140Q96RY7 1462 aa21.07■□□□□ 0.96
NLRC3-205ENST00000618137 POLA1P09884 1462 aaPredicted RBP21.04■□□□□ 0.96
NLRC3-205ENST00000618137 WRNQ14191 1432 aaPredicted RBP eCLIP21.04■□□□□ 0.96
NLRC3-205ENST00000618137 FGD5Q6ZNL6 1462 aa21■□□□□ 0.95
NLRC3-205ENST00000618137 TOP2BQ02880 1626 aa20.97■□□□□ 0.95
NLRC3-205ENST00000618137 BIVM-ERCC5R4GMW8 1640 aa20.96■□□□□ 0.95
NLRC3-205ENST00000618137 SOGA1O94964 1423 aa20.96■□□□□ 0.95
NLRC3-205ENST00000618137 TARBP1Q13395 1621 aaKnown RBP20.96■□□□□ 0.95
NLRC3-205ENST00000618137 SYNJ1O43426 1573 aa20.93■□□□□ 0.94
NLRC3-205ENST00000618137 RAD54L2Q9Y4B4 1467 aa20.91■□□□□ 0.94
NLRC3-205ENST00000618137 ZNF608Q9ULD9 1512 aaPredicted RBP20.9■□□□□ 0.94
NLRC3-205ENST00000618137 WDR97A6NE52 1622 aa20.89■□□□□ 0.93
NLRC3-205ENST00000618137 EIF4G3O43432 1585 aaKnown RBP20.85■□□□□ 0.93
NLRC3-205ENST00000618137 ABCA10Q8WWZ4 1543 aa20.84■□□□□ 0.93
NLRC3-205ENST00000618137 AQRO60306 1485 aaKnown RBP eCLIP20.81■□□□□ 0.92
NLRC3-205ENST00000618137 TDRD9Q8NDG6 1382 aaKnown RBP20.8■□□□□ 0.92
NLRC3-205ENST00000618137 GAPVD1Q14C86 1478 aa20.73■□□□□ 0.91
NLRC3-205ENST00000618137 ABCA5Q8WWZ7 1642 aa20.72■□□□□ 0.91
NLRC3-205ENST00000618137 GRIN2BQ13224 1484 aa20.72■□□□□ 0.91
NLRC3-205ENST00000618137 MAGI1Q96QZ7 1491 aaPredicted RBP20.67■□□□□ 0.9
NLRC3-205ENST00000618137 SNAPC4Q5SXM2 1469 aa20.63■□□□□ 0.89
NLRC3-205ENST00000618137 TRIM41Q8WV44 630 aa20.63■□□□□ 0.89
NLRC3-205ENST00000618137 PBRM1Q86U86 1689 aa20.63■□□□□ 0.89
NLRC3-205ENST00000618137 ERICH3Q5RHP9 1530 aa20.61■□□□□ 0.89
NLRC3-205ENST00000618137 KIF27Q86VH2 1401 aa20.61■□□□□ 0.89
NLRC3-205ENST00000618137 OSCARQ8IYS5 282 aa20.59■□□□□ 0.89
NLRC3-205ENST00000618137 DNAJC5Q9H3Z4 198 aa20.59■□□□□ 0.89
NLRC3-205ENST00000618137 SYNJ2O15056 1496 aa20.56■□□□□ 0.88
NLRC3-205ENST00000618137 CHMP7Q8WUX9 453 aaPredicted RBP20.53■□□□□ 0.88
NLRC3-205ENST00000618137 FBLN2P98095 1184 aa20.52■□□□□ 0.88
NLRC3-205ENST00000618137 FHAD1B1AJZ9 1412 aa20.52■□□□□ 0.87
NLRC3-205ENST00000618137 CHD1O14646 1710 aa20.51■□□□□ 0.87
NLRC3-205ENST00000618137 ADAMTS12P58397 1594 aa20.51■□□□□ 0.87
NLRC3-205ENST00000618137 IGF1RP08069 1367 aa20.48■□□□□ 0.87
NLRC3-205ENST00000618137 CHIC1Q5VXU3 224 aa20.45■□□□□ 0.86
NLRC3-205ENST00000618137 CUL7Q14999 1698 aa20.44■□□□□ 0.86
NLRC3-205ENST00000618137 GRIN2AQ12879 1464 aa20.43■□□□□ 0.86
NLRC3-205ENST00000618137 RUSC2Q8N2Y8 1516 aa20.37■□□□□ 0.85
NLRC3-205ENST00000618137 CARMIL1Q5VZK9 1371 aa20.36■□□□□ 0.85
NLRC3-205ENST00000618137 NUP160Q12769 1436 aa20.36■□□□□ 0.85
NLRC3-205ENST00000618137 CLASP1Q7Z460 1538 aa20.35■□□□□ 0.85
NLRC3-205ENST00000618137 EEA1Q15075 1411 aa20.35■□□□□ 0.85
NLRC3-205ENST00000618137 CEP170Q5SW79 1584 aa20.29■□□□□ 0.84
NLRC3-205ENST00000618137 RAPGEF2Q9Y4G8 1499 aa20.28■□□□□ 0.84
NLRC3-205ENST00000618137 CSRNP3Q8WYN3 585 aa20.24■□□□□ 0.83
NLRC3-205ENST00000618137 PRXQ9BXM0 1461 aa20.24■□□□□ 0.83
NLRC3-205ENST00000618137 ARHGEF11O15085 1522 aa20.22■□□□□ 0.83
NLRC3-205ENST00000618137 KIAA0586Q9BVV6 1533 aa20.21■□□□□ 0.83
NLRC3-205ENST00000618137 RIMBP3CA6NJZ7 1639 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 332.3 ms