RNA–Protein interactions for RNA: ENST00000615442.1

PVT1-223, Transcript of Pvt1 oncogene, humanhuman

Gene PVT1, Length 165 nt, Biotype misc RNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-223ENST00000615442 NISCHQ9Y2I1 1504 aa25■■□□□ 1.59
PVT1-223ENST00000615442 CCDC180Q9P1Z9 1646 aa22.06■■□□□ 1.12
PVT1-223ENST00000615442 ABCC9O60706 1549 aa21.39■■□□□ 1.01
PVT1-223ENST00000615442 ZCCHC6Q5VYS8 1495 aaKnown RBP20.86■□□□□ 0.93
PVT1-223ENST00000615442 DCAF8L2P0C7V8 631 aa20.83■□□□□ 0.93
PVT1-223ENST00000615442 NACADO15069 1562 aa20.75■□□□□ 0.91
PVT1-223ENST00000615442 MYO15BQ96JP2 1530 aa20.73■□□□□ 0.91
PVT1-223ENST00000615442 DCAF1Q9Y4B6 1507 aa20.72■□□□□ 0.91
PVT1-223ENST00000615442 RB1CC1Q8TDY2 1594 aa20.69■□□□□ 0.9
PVT1-223ENST00000615442 SCRIBQ14160 1630 aa20.14■□□□□ 0.81
PVT1-223ENST00000615442 UNC13AQ9UPW8 1703 aa20.1■□□□□ 0.81
PVT1-223ENST00000615442 PABPN1Q86U42 306 aaKnown RBP eCLIP20.07■□□□□ 0.8
PVT1-223ENST00000615442 BICRAQ9NZM4 1560 aa20.03■□□□□ 0.8
PVT1-223ENST00000615442 SHROOM4Q9ULL8 1493 aa19.91■□□□□ 0.78
PVT1-223ENST00000615442 EIF4G1Q04637 1599 aaKnown RBP19.49■□□□□ 0.71
PVT1-223ENST00000615442 DNAJC5BQ9UF47 199 aa19.46■□□□□ 0.71
PVT1-223ENST00000615442 CECR2Q9BXF3 1484 aa19.44■□□□□ 0.7
PVT1-223ENST00000615442 BAZ1AQ9NRL2 1556 aaPredicted RBP19.36■□□□□ 0.69
PVT1-223ENST00000615442 CC2D2AQ9P2K1 1620 aa19.34■□□□□ 0.69
PVT1-223ENST00000615442 SMARCA4P51532 1647 aa19.3■□□□□ 0.68
PVT1-223ENST00000615442 MROH2BQ7Z745 1585 aa19.25■□□□□ 0.67
PVT1-223ENST00000615442 ATAD2BQ9ULI0 1458 aa19.19■□□□□ 0.66
PVT1-223ENST00000615442 NCAPD3P42695 1498 aa19.17■□□□□ 0.66
PVT1-223ENST00000615442 SMARCA2P51531 1590 aa19.17■□□□□ 0.66
PVT1-223ENST00000615442 RSF1Q96T23 1441 aaPredicted RBP19.16■□□□□ 0.66
PVT1-223ENST00000615442 PEG3Q9GZU2 1588 aa19.15■□□□□ 0.66
PVT1-223ENST00000615442 HMGXB3Q12766 1538 aa19.05■□□□□ 0.64
PVT1-223ENST00000615442 BAZ1BQ9UIG0 1483 aaKnown RBP19.03■□□□□ 0.64
PVT1-223ENST00000615442 WIZO95785 1651 aa19.01■□□□□ 0.63
PVT1-223ENST00000615442 TOP2AP11388 1531 aaKnown RBP18.87■□□□□ 0.61
PVT1-223ENST00000615442 SUPT5HO00267 1087 aaKnown RBP18.86■□□□□ 0.61
PVT1-223ENST00000615442 CCDC88BA6NC98 1476 aa18.67■□□□□ 0.58
PVT1-223ENST00000615442 CADPSQ9ULU8 1353 aa18.63■□□□□ 0.57
PVT1-223ENST00000615442 LAMC3Q9Y6N6 1575 aa18.58■□□□□ 0.56
PVT1-223ENST00000615442 NESP48681 1621 aa18.56■□□□□ 0.56
PVT1-223ENST00000615442 CFTRP13569 1480 aa18.55■□□□□ 0.56
PVT1-223ENST00000615442 PDS5BQ9NTI5 1447 aa18.49■□□□□ 0.55
PVT1-223ENST00000615442 ERCC6Q03468 1493 aa18.43■□□□□ 0.54
PVT1-223ENST00000615442 FANCD2Q9BXW9 1451 aa18.38■□□□□ 0.53
PVT1-223ENST00000615442 CEP164Q9UPV0 1460 aa18.33■□□□□ 0.52
PVT1-223ENST00000615442 PRDM2Q13029 1718 aa18.29■□□□□ 0.52
PVT1-223ENST00000615442 KIF21AQ7Z4S6 1674 aa18.29■□□□□ 0.52
PVT1-223ENST00000615442 MRC2Q9UBG0 1479 aa18.26■□□□□ 0.51
PVT1-223ENST00000615442 THOC2Q8NI27 1593 aaKnown RBP18.21■□□□□ 0.51
PVT1-223ENST00000615442 CUX2O14529 1486 aa18.17■□□□□ 0.5
PVT1-223ENST00000615442 WDR62O43379 1518 aa18.17■□□□□ 0.5
PVT1-223ENST00000615442 ABCC8Q09428 1581 aa18.17■□□□□ 0.5
PVT1-223ENST00000615442 URB2Q14146 1524 aaKnown RBP18.16■□□□□ 0.5
PVT1-223ENST00000615442 TOPBP1Q92547 1522 aa18.1■□□□□ 0.49
PVT1-223ENST00000615442 DNMBPQ6XZF7 1577 aa18.08■□□□□ 0.49
PVT1-223ENST00000615442 WRNQ14191 1432 aaPredicted RBP eCLIP18.06■□□□□ 0.48
PVT1-223ENST00000615442 CUX1P39880 1505 aa18.04■□□□□ 0.48
PVT1-223ENST00000615442 POLA1P09884 1462 aaPredicted RBP17.96■□□□□ 0.47
PVT1-223ENST00000615442 FGD5Q6ZNL6 1462 aa17.95■□□□□ 0.46
PVT1-223ENST00000615442 IFT140Q96RY7 1462 aa17.95■□□□□ 0.46
PVT1-223ENST00000615442 TOP2BQ02880 1626 aa17.94■□□□□ 0.46
PVT1-223ENST00000615442 SOGA1O94964 1423 aa17.94■□□□□ 0.46
PVT1-223ENST00000615442 SYNJ1O43426 1573 aa17.93■□□□□ 0.46
PVT1-223ENST00000615442 BIVM-ERCC5R4GMW8 1640 aa17.92■□□□□ 0.46
PVT1-223ENST00000615442 RAD54L2Q9Y4B4 1467 aa17.88■□□□□ 0.45
PVT1-223ENST00000615442 TARBP1Q13395 1621 aaKnown RBP17.86■□□□□ 0.45
PVT1-223ENST00000615442 TRIM41Q8WV44 630 aa17.84■□□□□ 0.45
PVT1-223ENST00000615442 ZNF608Q9ULD9 1512 aaPredicted RBP17.82■□□□□ 0.44
PVT1-223ENST00000615442 ABCA10Q8WWZ4 1543 aa17.81■□□□□ 0.44
PVT1-223ENST00000615442 TDRD9Q8NDG6 1382 aaKnown RBP17.79■□□□□ 0.44
PVT1-223ENST00000615442 AQRO60306 1485 aaKnown RBP eCLIP17.77■□□□□ 0.44
PVT1-223ENST00000615442 WDR97A6NE52 1622 aa17.76■□□□□ 0.43
PVT1-223ENST00000615442 CHIC1Q5VXU3 224 aa17.76■□□□□ 0.43
PVT1-223ENST00000615442 EIF4G3O43432 1585 aaKnown RBP17.72■□□□□ 0.43
PVT1-223ENST00000615442 GAPVD1Q14C86 1478 aa17.71■□□□□ 0.43
PVT1-223ENST00000615442 GRIN2BQ13224 1484 aa17.68■□□□□ 0.42
PVT1-223ENST00000615442 KIF27Q86VH2 1401 aa17.67■□□□□ 0.42
PVT1-223ENST00000615442 ABCA5Q8WWZ7 1642 aa17.67■□□□□ 0.42
PVT1-223ENST00000615442 MAGI1Q96QZ7 1491 aaPredicted RBP17.6■□□□□ 0.41
PVT1-223ENST00000615442 ERICH3Q5RHP9 1530 aa17.6■□□□□ 0.41
PVT1-223ENST00000615442 SNAPC4Q5SXM2 1469 aa17.59■□□□□ 0.41
PVT1-223ENST00000615442 IGF1RP08069 1367 aa17.59■□□□□ 0.41
PVT1-223ENST00000615442 PBRM1Q86U86 1689 aa17.56■□□□□ 0.4
PVT1-223ENST00000615442 CHMP7Q8WUX9 453 aaPredicted RBP17.55■□□□□ 0.4
PVT1-223ENST00000615442 RUSC2Q8N2Y8 1516 aa17.54■□□□□ 0.4
PVT1-223ENST00000615442 SYNJ2O15056 1496 aa17.53■□□□□ 0.4
PVT1-223ENST00000615442 FBLN2P98095 1184 aa17.53■□□□□ 0.4
PVT1-223ENST00000615442 FHAD1B1AJZ9 1412 aa17.53■□□□□ 0.4
PVT1-223ENST00000615442 OSCARQ8IYS5 282 aa17.52■□□□□ 0.4
PVT1-223ENST00000615442 EEA1Q15075 1411 aa17.51■□□□□ 0.39
PVT1-223ENST00000615442 CARMIL1Q5VZK9 1371 aa17.48■□□□□ 0.39
PVT1-223ENST00000615442 ADAMTS12P58397 1594 aa17.48■□□□□ 0.39
PVT1-223ENST00000615442 CSRNP3Q8WYN3 585 aa17.47■□□□□ 0.39
PVT1-223ENST00000615442 CUL7Q14999 1698 aa17.45■□□□□ 0.38
PVT1-223ENST00000615442 GRIN2AQ12879 1464 aa17.44■□□□□ 0.38
PVT1-223ENST00000615442 FAM9AQ8IZU1 332 aaPredicted RBP17.41■□□□□ 0.38
PVT1-223ENST00000615442 CHD1O14646 1710 aa17.41■□□□□ 0.38
PVT1-223ENST00000615442 PRXQ9BXM0 1461 aa17.38■□□□□ 0.37
PVT1-223ENST00000615442 RAPGEF2Q9Y4G8 1499 aa17.38■□□□□ 0.37
PVT1-223ENST00000615442 DNAJC5Q9H3Z4 198 aa17.38■□□□□ 0.37
PVT1-223ENST00000615442 NUP160Q12769 1436 aa17.36■□□□□ 0.37
PVT1-223ENST00000615442 CEP170Q5SW79 1584 aa17.3■□□□□ 0.36
PVT1-223ENST00000615442 CLASP1Q7Z460 1538 aa17.3■□□□□ 0.36
PVT1-223ENST00000615442 KIAA0586Q9BVV6 1533 aa17.27■□□□□ 0.36
PVT1-223ENST00000615442 JPH4Q96JJ6 628 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms