RNA–Protein interactions for RNA: ENST00000615335.4

FOXN3-219, Transcript of forkhead box N3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene FOXN3, Length 2,421 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3-219ENST00000615335 NISCHQ9Y2I1 1504 aa29.18■■■□□ 2.26
FOXN3-219ENST00000615335 CCDC180Q9P1Z9 1646 aa25.6■■□□□ 1.69
FOXN3-219ENST00000615335 ABCC9O60706 1549 aa24.57■■□□□ 1.52
FOXN3-219ENST00000615335 ZCCHC6Q5VYS8 1495 aaKnown RBP24.43■■□□□ 1.5
FOXN3-219ENST00000615335 DCAF8L2P0C7V8 631 aa24.33■■□□□ 1.48
FOXN3-219ENST00000615335 DCAF1Q9Y4B6 1507 aa24.1■■□□□ 1.45
FOXN3-219ENST00000615335 MYO15BQ96JP2 1530 aa23.95■■□□□ 1.42
FOXN3-219ENST00000615335 NACADO15069 1562 aa23.94■■□□□ 1.42
FOXN3-219ENST00000615335 RB1CC1Q8TDY2 1594 aa23.83■■□□□ 1.41
FOXN3-219ENST00000615335 SHROOM4Q9ULL8 1493 aa23.61■■□□□ 1.37
FOXN3-219ENST00000615335 SCRIBQ14160 1630 aa23.52■■□□□ 1.36
FOXN3-219ENST00000615335 UNC13AQ9UPW8 1703 aa23.33■■□□□ 1.33
FOXN3-219ENST00000615335 PABPN1Q86U42 306 aaKnown RBP eCLIP23.12■■□□□ 1.29
FOXN3-219ENST00000615335 BICRAQ9NZM4 1560 aa23.09■■□□□ 1.29
FOXN3-219ENST00000615335 CECR2Q9BXF3 1484 aa22.71■■□□□ 1.23
FOXN3-219ENST00000615335 SUPT5HO00267 1087 aaKnown RBP22.57■■□□□ 1.2
FOXN3-219ENST00000615335 BAZ1AQ9NRL2 1556 aaPredicted RBP22.57■■□□□ 1.2
FOXN3-219ENST00000615335 MROH2BQ7Z745 1585 aa22.53■■□□□ 1.2
FOXN3-219ENST00000615335 SMARCA4P51532 1647 aa22.51■■□□□ 1.19
FOXN3-219ENST00000615335 RSF1Q96T23 1441 aaPredicted RBP22.51■■□□□ 1.19
FOXN3-219ENST00000615335 EIF4G1Q04637 1599 aaKnown RBP22.45■■□□□ 1.18
FOXN3-219ENST00000615335 WIZO95785 1651 aa22.34■■□□□ 1.17
FOXN3-219ENST00000615335 ATAD2BQ9ULI0 1458 aa22.23■■□□□ 1.15
FOXN3-219ENST00000615335 PEG3Q9GZU2 1588 aa22.23■■□□□ 1.15
FOXN3-219ENST00000615335 SMARCA2P51531 1590 aa22.22■■□□□ 1.15
FOXN3-219ENST00000615335 CC2D2AQ9P2K1 1620 aa22.21■■□□□ 1.15
FOXN3-219ENST00000615335 BAZ1BQ9UIG0 1483 aaKnown RBP22.1■■□□□ 1.13
FOXN3-219ENST00000615335 NCAPD3P42695 1498 aa22.09■■□□□ 1.13
FOXN3-219ENST00000615335 TOP2AP11388 1531 aaKnown RBP22.08■■□□□ 1.13
FOXN3-219ENST00000615335 HMGXB3Q12766 1538 aa22.02■■□□□ 1.12
FOXN3-219ENST00000615335 DNAJC5BQ9UF47 199 aa21.98■■□□□ 1.11
FOXN3-219ENST00000615335 PELP1Q8IZL8 1130 aaKnown RBP21.94■■□□□ 1.1
FOXN3-219ENST00000615335 CCDC88BA6NC98 1476 aa21.87■■□□□ 1.09
FOXN3-219ENST00000615335 CADPSQ9ULU8 1353 aa21.52■■□□□ 1.04
FOXN3-219ENST00000615335 CFTRP13569 1480 aa21.51■■□□□ 1.03
FOXN3-219ENST00000615335 NESP48681 1621 aa21.45■■□□□ 1.02
FOXN3-219ENST00000615335 HRCP23327 699 aa21.42■■□□□ 1.02
FOXN3-219ENST00000615335 LAMC3Q9Y6N6 1575 aa21.41■■□□□ 1.02
FOXN3-219ENST00000615335 MYT1Q01538 1121 aa21.41■■□□□ 1.02
FOXN3-219ENST00000615335 PRDM2Q13029 1718 aa21.38■■□□□ 1.01
FOXN3-219ENST00000615335 CHIC1Q5VXU3 224 aa21.37■■□□□ 1.01
FOXN3-219ENST00000615335 ABCC8Q09428 1581 aa21.31■■□□□ 1
FOXN3-219ENST00000615335 FANCD2Q9BXW9 1451 aa21.28■■□□□ 1
FOXN3-219ENST00000615335 PDS5BQ9NTI5 1447 aa21.28■■□□□ 1
FOXN3-219ENST00000615335 TRIM41Q8WV44 630 aa21.24■□□□□ 0.99
FOXN3-219ENST00000615335 WRNQ14191 1432 aaPredicted RBP eCLIP21.22■□□□□ 0.99
FOXN3-219ENST00000615335 CEP164Q9UPV0 1460 aa21.19■□□□□ 0.98
FOXN3-219ENST00000615335 KIF21AQ7Z4S6 1674 aa21.19■□□□□ 0.98
FOXN3-219ENST00000615335 ERCC6Q03468 1493 aa21.12■□□□□ 0.97
FOXN3-219ENST00000615335 SYNJ1O43426 1573 aa21.12■□□□□ 0.97
FOXN3-219ENST00000615335 CUX1P39880 1505 aa21.09■□□□□ 0.97
FOXN3-219ENST00000615335 TOP2BQ02880 1626 aa21.07■□□□□ 0.96
FOXN3-219ENST00000615335 BIVM-ERCC5R4GMW8 1640 aa21.04■□□□□ 0.96
FOXN3-219ENST00000615335 URB2Q14146 1524 aaKnown RBP21.02■□□□□ 0.96
FOXN3-219ENST00000615335 DNMBPQ6XZF7 1577 aa21.01■□□□□ 0.95
FOXN3-219ENST00000615335 TOPBP1Q92547 1522 aa21■□□□□ 0.95
FOXN3-219ENST00000615335 MRC2Q9UBG0 1479 aa21■□□□□ 0.95
FOXN3-219ENST00000615335 FGD5Q6ZNL6 1462 aa20.93■□□□□ 0.94
FOXN3-219ENST00000615335 THOC2Q8NI27 1593 aaKnown RBP20.9■□□□□ 0.94
FOXN3-219ENST00000615335 WDR62O43379 1518 aa20.89■□□□□ 0.94
FOXN3-219ENST00000615335 POLA1P09884 1462 aaPredicted RBP20.88■□□□□ 0.93
FOXN3-219ENST00000615335 FAM9AQ8IZU1 332 aaPredicted RBP20.85■□□□□ 0.93
FOXN3-219ENST00000615335 SOGA1O94964 1423 aa20.84■□□□□ 0.93
FOXN3-219ENST00000615335 RAD54L2Q9Y4B4 1467 aa20.82■□□□□ 0.92
FOXN3-219ENST00000615335 RUSC2Q8N2Y8 1516 aa20.77■□□□□ 0.92
FOXN3-219ENST00000615335 CUX2O14529 1486 aa20.75■□□□□ 0.91
FOXN3-219ENST00000615335 ABCA10Q8WWZ4 1543 aa20.72■□□□□ 0.91
FOXN3-219ENST00000615335 KIF27Q86VH2 1401 aa20.72■□□□□ 0.91
FOXN3-219ENST00000615335 TARBP1Q13395 1621 aaKnown RBP20.71■□□□□ 0.91
FOXN3-219ENST00000615335 EEA1Q15075 1411 aa20.7■□□□□ 0.9
FOXN3-219ENST00000615335 IFT140Q96RY7 1462 aa20.7■□□□□ 0.9
FOXN3-219ENST00000615335 PCGF6Q9BYE7 350 aa20.69■□□□□ 0.9
FOXN3-219ENST00000615335 WDR97A6NE52 1622 aa20.67■□□□□ 0.9
FOXN3-219ENST00000615335 CSRNP3Q8WYN3 585 aa20.67■□□□□ 0.9
FOXN3-219ENST00000615335 TDRD9Q8NDG6 1382 aaKnown RBP20.67■□□□□ 0.9
FOXN3-219ENST00000615335 LOC105371045A0A1W2PR82 267 aa20.65■□□□□ 0.9
FOXN3-219ENST00000615335 PPARGC1BQ86YN6 1023 aaKnown RBP20.62■□□□□ 0.89
FOXN3-219ENST00000615335 ZNF608Q9ULD9 1512 aaPredicted RBP20.6■□□□□ 0.89
FOXN3-219ENST00000615335 EHMT2Q96KQ7 1210 aa20.59■□□□□ 0.89
FOXN3-219ENST00000615335 AQRO60306 1485 aaKnown RBP eCLIP20.58■□□□□ 0.894e-7■■■□□ 16.7
FOXN3-219ENST00000615335 GAPVD1Q14C86 1478 aa20.58■□□□□ 0.89
FOXN3-219ENST00000615335 ABCA5Q8WWZ7 1642 aa20.58■□□□□ 0.88
FOXN3-219ENST00000615335 IGF1RP08069 1367 aa20.55■□□□□ 0.88
FOXN3-219ENST00000615335 EIF4G3O43432 1585 aaKnown RBP20.52■□□□□ 0.87
FOXN3-219ENST00000615335 SCAF1Q9H7N4 1312 aaKnown RBP20.49■□□□□ 0.87
FOXN3-219ENST00000615335 PBRM1Q86U86 1689 aa20.48■□□□□ 0.87
FOXN3-219ENST00000615335 ERICH3Q5RHP9 1530 aa20.48■□□□□ 0.87
FOXN3-219ENST00000615335 GRIN2BQ13224 1484 aa20.47■□□□□ 0.87
FOXN3-219ENST00000615335 CARMIL1Q5VZK9 1371 aa20.46■□□□□ 0.87
FOXN3-219ENST00000615335 PRXQ9BXM0 1461 aa20.46■□□□□ 0.87
FOXN3-219ENST00000615335 KIF21BO75037 1637 aa20.45■□□□□ 0.86
FOXN3-219ENST00000615335 RAPGEF2Q9Y4G8 1499 aa20.42■□□□□ 0.86
FOXN3-219ENST00000615335 CUL7Q14999 1698 aa20.42■□□□□ 0.86
FOXN3-219ENST00000615335 GOLGA3Q08378 1498 aa20.42■□□□□ 0.86
FOXN3-219ENST00000615335 UBTFP17480 764 aaKnown RBP20.41■□□□□ 0.86
FOXN3-219ENST00000615335 SNAPC4Q5SXM2 1469 aa20.37■□□□□ 0.85
FOXN3-219ENST00000615335 FHAD1B1AJZ9 1412 aa20.35■□□□□ 0.85
FOXN3-219ENST00000615335 TTBK1Q5TCY1 1321 aaPredicted RBP20.34■□□□□ 0.85
FOXN3-219ENST00000615335 TRIM26Q12899 539 aaPredicted RBP20.34■□□□□ 0.85
FOXN3-219ENST00000615335 ADAMTS12P58397 1594 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms