RNA–Protein interactions for RNA: ENST00000607841.5

CTSA-219, Transcript of cathepsin A, humanhuman

TSL 2

Gene CTSA, Length 571 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-219ENST00000607841 NISCHQ9Y2I1 1504 aa34.09■■■■□ 3.05
CTSA-219ENST00000607841 CCDC180Q9P1Z9 1646 aa30.15■■■□□ 2.42
CTSA-219ENST00000607841 ABCC9O60706 1549 aa29.37■■■□□ 2.29
CTSA-219ENST00000607841 DCAF8L2P0C7V8 631 aa28.51■■■□□ 2.15
CTSA-219ENST00000607841 ZCCHC6Q5VYS8 1495 aaKnown RBP28.42■■■□□ 2.14
CTSA-219ENST00000607841 NACADO15069 1562 aa28.37■■■□□ 2.13
CTSA-219ENST00000607841 RB1CC1Q8TDY2 1594 aa28.35■■■□□ 2.13
CTSA-219ENST00000607841 MYO15BQ96JP2 1530 aa28.28■■■□□ 2.12
CTSA-219ENST00000607841 DCAF1Q9Y4B6 1507 aa28.23■■■□□ 2.11
CTSA-219ENST00000607841 SCRIBQ14160 1630 aa27.54■■■□□ 2
CTSA-219ENST00000607841 UNC13AQ9UPW8 1703 aa27.53■■■□□ 2
CTSA-219ENST00000607841 PABPN1Q86U42 306 aaKnown RBP eCLIP27.53■■■□□ 2
CTSA-219ENST00000607841 BICRAQ9NZM4 1560 aa27.41■■□□□ 1.98
CTSA-219ENST00000607841 SHROOM4Q9ULL8 1493 aa27.25■■□□□ 1.95
CTSA-219ENST00000607841 DNAJC5BQ9UF47 199 aa27.04■■□□□ 1.92
CTSA-219ENST00000607841 EIF4G1Q04637 1599 aaKnown RBP26.71■■□□□ 1.87
CTSA-219ENST00000607841 CC2D2AQ9P2K1 1620 aa26.54■■□□□ 1.84
CTSA-219ENST00000607841 CECR2Q9BXF3 1484 aa26.51■■□□□ 1.83
CTSA-219ENST00000607841 BAZ1AQ9NRL2 1556 aaPredicted RBP26.42■■□□□ 1.82
CTSA-219ENST00000607841 SMARCA4P51532 1647 aa26.36■■□□□ 1.81
CTSA-219ENST00000607841 MROH2BQ7Z745 1585 aa26.24■■□□□ 1.79
CTSA-219ENST00000607841 ATAD2BQ9ULI0 1458 aa26.23■■□□□ 1.79
CTSA-219ENST00000607841 SMARCA2P51531 1590 aa26.2■■□□□ 1.79
CTSA-219ENST00000607841 NCAPD3P42695 1498 aa26.2■■□□□ 1.78
CTSA-219ENST00000607841 PEG3Q9GZU2 1588 aa26.12■■□□□ 1.77
CTSA-219ENST00000607841 RSF1Q96T23 1441 aaPredicted RBP26.06■■□□□ 1.76
CTSA-219ENST00000607841 HMGXB3Q12766 1538 aa26.04■■□□□ 1.76
CTSA-219ENST00000607841 BAZ1BQ9UIG0 1483 aaKnown RBP26.04■■□□□ 1.76
CTSA-219ENST00000607841 WIZO95785 1651 aa25.93■■□□□ 1.74
CTSA-219ENST00000607841 TOP2AP11388 1531 aaKnown RBP25.73■■□□□ 1.71
CTSA-219ENST00000607841 SUPT5HO00267 1087 aaKnown RBP25.61■■□□□ 1.69
CTSA-219ENST00000607841 CADPSQ9ULU8 1353 aa25.47■■□□□ 1.67
CTSA-219ENST00000607841 LAMC3Q9Y6N6 1575 aa25.44■■□□□ 1.66
CTSA-219ENST00000607841 CCDC88BA6NC98 1476 aa25.44■■□□□ 1.66
CTSA-219ENST00000607841 NESP48681 1621 aa25.44■■□□□ 1.66
CTSA-219ENST00000607841 ERCC6Q03468 1493 aa25.34■■□□□ 1.65
CTSA-219ENST00000607841 PDS5BQ9NTI5 1447 aa25.34■■□□□ 1.65
CTSA-219ENST00000607841 CFTRP13569 1480 aa25.33■■□□□ 1.65
CTSA-219ENST00000607841 FANCD2Q9BXW9 1451 aa25.15■■□□□ 1.62
CTSA-219ENST00000607841 DNAJC5Q9H3Z4 198 aa25.11■■□□□ 1.61
CTSA-219ENST00000607841 CEP164Q9UPV0 1460 aa25.09■■□□□ 1.61
CTSA-219ENST00000607841 KIF21AQ7Z4S6 1674 aa25.07■■□□□ 1.6
CTSA-219ENST00000607841 MRC2Q9UBG0 1479 aa25.02■■□□□ 1.6
CTSA-219ENST00000607841 PRDM2Q13029 1718 aa25■■□□□ 1.59
CTSA-219ENST00000607841 CUX2O14529 1486 aa24.99■■□□□ 1.59
CTSA-219ENST00000607841 THOC2Q8NI27 1593 aaKnown RBP24.97■■□□□ 1.59
CTSA-219ENST00000607841 WDR62O43379 1518 aa24.89■■□□□ 1.57
CTSA-219ENST00000607841 URB2Q14146 1524 aaKnown RBP24.84■■□□□ 1.57
CTSA-219ENST00000607841 ABCC8Q09428 1581 aa24.83■■□□□ 1.57
CTSA-219ENST00000607841 TOPBP1Q92547 1522 aa24.74■■□□□ 1.55
CTSA-219ENST00000607841 DNMBPQ6XZF7 1577 aa24.72■■□□□ 1.55
CTSA-219ENST00000607841 CUX1P39880 1505 aa24.61■■□□□ 1.53
CTSA-219ENST00000607841 WRNQ14191 1432 aaPredicted RBP eCLIP24.59■■□□□ 1.53
CTSA-219ENST00000607841 IFT140Q96RY7 1462 aa24.58■■□□□ 1.53
CTSA-219ENST00000607841 POLA1P09884 1462 aaPredicted RBP24.55■■□□□ 1.52
CTSA-219ENST00000607841 FGD5Q6ZNL6 1462 aa24.52■■□□□ 1.52
CTSA-219ENST00000607841 SOGA1O94964 1423 aa24.51■■□□□ 1.51
CTSA-219ENST00000607841 TOP2BQ02880 1626 aa24.46■■□□□ 1.51
CTSA-219ENST00000607841 RAD54L2Q9Y4B4 1467 aa24.44■■□□□ 1.5
CTSA-219ENST00000607841 SYNJ1O43426 1573 aa24.43■■□□□ 1.5
CTSA-219ENST00000607841 BIVM-ERCC5R4GMW8 1640 aa24.42■■□□□ 1.5
CTSA-219ENST00000607841 TARBP1Q13395 1621 aaKnown RBP24.41■■□□□ 1.5
CTSA-219ENST00000607841 ZNF608Q9ULD9 1512 aaPredicted RBP24.4■■□□□ 1.5
CTSA-219ENST00000607841 TDRD9Q8NDG6 1382 aaKnown RBP24.32■■□□□ 1.48
CTSA-219ENST00000607841 AQRO60306 1485 aaKnown RBP eCLIP24.32■■□□□ 1.48
CTSA-219ENST00000607841 ABCA10Q8WWZ4 1543 aa24.3■■□□□ 1.48
CTSA-219ENST00000607841 WDR97A6NE52 1622 aa24.28■■□□□ 1.48
CTSA-219ENST00000607841 EIF4G3O43432 1585 aaKnown RBP24.28■■□□□ 1.48
CTSA-219ENST00000607841 TRIM41Q8WV44 630 aa24.22■■□□□ 1.47
CTSA-219ENST00000607841 GAPVD1Q14C86 1478 aa24.2■■□□□ 1.47
CTSA-219ENST00000607841 GRIN2BQ13224 1484 aa24.18■■□□□ 1.46
CTSA-219ENST00000607841 ABCA5Q8WWZ7 1642 aa24.13■■□□□ 1.45
CTSA-219ENST00000607841 KIF27Q86VH2 1401 aa24.1■■□□□ 1.45
CTSA-219ENST00000607841 SNAPC4Q5SXM2 1469 aa24.09■■□□□ 1.45
CTSA-219ENST00000607841 MAGI1Q96QZ7 1491 aaPredicted RBP24.09■■□□□ 1.45
CTSA-219ENST00000607841 OSCARQ8IYS5 282 aa24.07■■□□□ 1.44
CTSA-219ENST00000607841 FBLN2P98095 1184 aa24.06■■□□□ 1.44
CTSA-219ENST00000607841 CHMP7Q8WUX9 453 aaPredicted RBP24.04■■□□□ 1.44
CTSA-219ENST00000607841 ERICH3Q5RHP9 1530 aa24.02■■□□□ 1.44
CTSA-219ENST00000607841 PBRM1Q86U86 1689 aa24.02■■□□□ 1.44
CTSA-219ENST00000607841 CHIC1Q5VXU3 224 aa24■■□□□ 1.43
CTSA-219ENST00000607841 SYNJ2O15056 1496 aa24■■□□□ 1.43
CTSA-219ENST00000607841 FHAD1B1AJZ9 1412 aa23.95■■□□□ 1.42
CTSA-219ENST00000607841 IGF1RP08069 1367 aa23.95■■□□□ 1.42
CTSA-219ENST00000607841 ADAMTS12P58397 1594 aa23.9■■□□□ 1.42
CTSA-219ENST00000607841 CHD1O14646 1710 aa23.87■■□□□ 1.41
CTSA-219ENST00000607841 GRIN2AQ12879 1464 aa23.85■■□□□ 1.41
CTSA-219ENST00000607841 RUSC2Q8N2Y8 1516 aa23.84■■□□□ 1.41
CTSA-219ENST00000607841 CARMIL1Q5VZK9 1371 aa23.82■■□□□ 1.4
CTSA-219ENST00000607841 CUL7Q14999 1698 aa23.81■■□□□ 1.4
CTSA-219ENST00000607841 EEA1Q15075 1411 aa23.77■■□□□ 1.4
CTSA-219ENST00000607841 NUP160Q12769 1436 aa23.74■■□□□ 1.39
CTSA-219ENST00000607841 CSRNP3Q8WYN3 585 aa23.73■■□□□ 1.39
CTSA-219ENST00000607841 CLASP1Q7Z460 1538 aa23.69■■□□□ 1.38
CTSA-219ENST00000607841 RAPGEF2Q9Y4G8 1499 aa23.68■■□□□ 1.38
CTSA-219ENST00000607841 FAM9AQ8IZU1 332 aaPredicted RBP23.67■■□□□ 1.38
CTSA-219ENST00000607841 CEP170Q5SW79 1584 aa23.66■■□□□ 1.38
CTSA-219ENST00000607841 PRXQ9BXM0 1461 aa23.63■■□□□ 1.37
CTSA-219ENST00000607841 KIAA0586Q9BVV6 1533 aa23.59■■□□□ 1.37
CTSA-219ENST00000607841 JPH4Q96JJ6 628 aa23.57■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 229.8 ms