RNA–Protein interactions for RNA: ENST00000600137.5

VRK3-219, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 822 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-219ENST00000600137 NISCHQ9Y2I1 1504 aa33.22■■■□□ 2.91
VRK3-219ENST00000600137 CCDC180Q9P1Z9 1646 aa29.38■■■□□ 2.29
VRK3-219ENST00000600137 ABCC9O60706 1549 aa28.56■■■□□ 2.16
VRK3-219ENST00000600137 ZCCHC6Q5VYS8 1495 aaKnown RBP27.7■■■□□ 2.03
VRK3-219ENST00000600137 DCAF8L2P0C7V8 631 aa27.59■■■□□ 2.01
VRK3-219ENST00000600137 NACADO15069 1562 aa27.58■■■□□ 2.01
VRK3-219ENST00000600137 RB1CC1Q8TDY2 1594 aa27.53■■■□□ 2
VRK3-219ENST00000600137 MYO15BQ96JP2 1530 aa27.52■■■□□ 2
VRK3-219ENST00000600137 DCAF1Q9Y4B6 1507 aa27.49■■□□□ 1.99
VRK3-219ENST00000600137 UNC13AQ9UPW8 1703 aa26.99■■□□□ 1.91
VRK3-219ENST00000600137 BICRAQ9NZM4 1560 aa26.81■■□□□ 1.88
VRK3-219ENST00000600137 SCRIBQ14160 1630 aa26.81■■□□□ 1.88
VRK3-219ENST00000600137 PABPN1Q86U42 306 aaKnown RBP eCLIP26.76■■□□□ 1.87
VRK3-219ENST00000600137 SHROOM4Q9ULL8 1493 aa26.42■■□□□ 1.82
VRK3-219ENST00000600137 DNAJC5BQ9UF47 199 aa26.18■■□□□ 1.78
VRK3-219ENST00000600137 EIF4G1Q04637 1599 aaKnown RBP26.01■■□□□ 1.75
VRK3-219ENST00000600137 CECR2Q9BXF3 1484 aa25.9■■□□□ 1.74
VRK3-219ENST00000600137 CC2D2AQ9P2K1 1620 aa25.85■■□□□ 1.73
VRK3-219ENST00000600137 SMARCA4P51532 1647 aa25.7■■□□□ 1.71
VRK3-219ENST00000600137 BAZ1AQ9NRL2 1556 aaPredicted RBP25.67■■□□□ 1.7
VRK3-219ENST00000600137 MROH2BQ7Z745 1585 aa25.62■■□□□ 1.69
VRK3-219ENST00000600137 ATAD2BQ9ULI0 1458 aa25.54■■□□□ 1.68
VRK3-219ENST00000600137 NCAPD3P42695 1498 aa25.5■■□□□ 1.67
VRK3-219ENST00000600137 PEG3Q9GZU2 1588 aa25.48■■□□□ 1.67
VRK3-219ENST00000600137 SMARCA2P51531 1590 aa25.45■■□□□ 1.66
VRK3-219ENST00000600137 RSF1Q96T23 1441 aaPredicted RBP25.41■■□□□ 1.66
VRK3-219ENST00000600137 HMGXB3Q12766 1538 aa25.34■■□□□ 1.65
VRK3-219ENST00000600137 WIZO95785 1651 aa25.33■■□□□ 1.65
VRK3-219ENST00000600137 BAZ1BQ9UIG0 1483 aaKnown RBP25.27■■□□□ 1.64
VRK3-219ENST00000600137 TOP2AP11388 1531 aaKnown RBP25.04■■□□□ 1.6
VRK3-219ENST00000600137 SUPT5HO00267 1087 aaKnown RBP24.86■■□□□ 1.57
VRK3-219ENST00000600137 NESP48681 1621 aa24.83■■□□□ 1.56
VRK3-219ENST00000600137 CCDC88BA6NC98 1476 aa24.8■■□□□ 1.56
VRK3-219ENST00000600137 CADPSQ9ULU8 1353 aa24.75■■□□□ 1.55
VRK3-219ENST00000600137 LAMC3Q9Y6N6 1575 aa24.73■■□□□ 1.55
VRK3-219ENST00000600137 CFTRP13569 1480 aa24.66■■□□□ 1.54
VRK3-219ENST00000600137 PDS5BQ9NTI5 1447 aa24.54■■□□□ 1.52
VRK3-219ENST00000600137 ERCC6Q03468 1493 aa24.51■■□□□ 1.51
VRK3-219ENST00000600137 KIF21AQ7Z4S6 1674 aa24.5■■□□□ 1.51
VRK3-219ENST00000600137 FANCD2Q9BXW9 1451 aa24.44■■□□□ 1.5
VRK3-219ENST00000600137 PRDM2Q13029 1718 aa24.42■■□□□ 1.5
VRK3-219ENST00000600137 THOC2Q8NI27 1593 aaKnown RBP24.37■■□□□ 1.49
VRK3-219ENST00000600137 CEP164Q9UPV0 1460 aa24.34■■□□□ 1.49
VRK3-219ENST00000600137 MRC2Q9UBG0 1479 aa24.29■■□□□ 1.48
VRK3-219ENST00000600137 CUX2O14529 1486 aa24.24■■□□□ 1.47
VRK3-219ENST00000600137 WDR62O43379 1518 aa24.23■■□□□ 1.47
VRK3-219ENST00000600137 URB2Q14146 1524 aaKnown RBP24.23■■□□□ 1.47
VRK3-219ENST00000600137 TOPBP1Q92547 1522 aa24.09■■□□□ 1.45
VRK3-219ENST00000600137 ABCC8Q09428 1581 aa24.05■■□□□ 1.44
VRK3-219ENST00000600137 DNMBPQ6XZF7 1577 aa24.05■■□□□ 1.44
VRK3-219ENST00000600137 CUX1P39880 1505 aa24■■□□□ 1.43
VRK3-219ENST00000600137 POLA1P09884 1462 aaPredicted RBP23.9■■□□□ 1.42
VRK3-219ENST00000600137 WRNQ14191 1432 aaPredicted RBP eCLIP23.89■■□□□ 1.41
VRK3-219ENST00000600137 FGD5Q6ZNL6 1462 aa23.86■■□□□ 1.41
VRK3-219ENST00000600137 SYNJ1O43426 1573 aa23.86■■□□□ 1.41
VRK3-219ENST00000600137 IFT140Q96RY7 1462 aa23.85■■□□□ 1.41
VRK3-219ENST00000600137 TARBP1Q13395 1621 aaKnown RBP23.84■■□□□ 1.41
VRK3-219ENST00000600137 TOP2BQ02880 1626 aa23.83■■□□□ 1.41
VRK3-219ENST00000600137 BIVM-ERCC5R4GMW8 1640 aa23.83■■□□□ 1.41
VRK3-219ENST00000600137 RAD54L2Q9Y4B4 1467 aa23.81■■□□□ 1.4
VRK3-219ENST00000600137 SOGA1O94964 1423 aa23.8■■□□□ 1.4
VRK3-219ENST00000600137 ZNF608Q9ULD9 1512 aaPredicted RBP23.79■■□□□ 1.4
VRK3-219ENST00000600137 AQRO60306 1485 aaKnown RBP eCLIP23.67■■□□□ 1.38
VRK3-219ENST00000600137 WDR97A6NE52 1622 aa23.66■■□□□ 1.38
VRK3-219ENST00000600137 TDRD9Q8NDG6 1382 aaKnown RBP23.66■■□□□ 1.38
VRK3-219ENST00000600137 ABCA10Q8WWZ4 1543 aa23.65■■□□□ 1.38
VRK3-219ENST00000600137 EIF4G3O43432 1585 aaKnown RBP23.64■■□□□ 1.37
VRK3-219ENST00000600137 ABCA5Q8WWZ7 1642 aa23.53■■□□□ 1.36
VRK3-219ENST00000600137 GAPVD1Q14C86 1478 aa23.51■■□□□ 1.35
VRK3-219ENST00000600137 GRIN2BQ13224 1484 aa23.47■■□□□ 1.35
VRK3-219ENST00000600137 TRIM41Q8WV44 630 aa23.45■■□□□ 1.34
VRK3-219ENST00000600137 PBRM1Q86U86 1689 aa23.42■■□□□ 1.34
VRK3-219ENST00000600137 CHIC1Q5VXU3 224 aa23.41■■□□□ 1.34
VRK3-219ENST00000600137 SNAPC4Q5SXM2 1469 aa23.41■■□□□ 1.34
VRK3-219ENST00000600137 MAGI1Q96QZ7 1491 aaPredicted RBP23.37■■□□□ 1.33
VRK3-219ENST00000600137 KIF27Q86VH2 1401 aa23.35■■□□□ 1.33
VRK3-219ENST00000600137 ERICH3Q5RHP9 1530 aa23.35■■□□□ 1.33
VRK3-219ENST00000600137 IGF1RP08069 1367 aa23.33■■□□□ 1.33
VRK3-219ENST00000600137 DNAJC5Q9H3Z4 198 aa23.33■■□□□ 1.33
VRK3-219ENST00000600137 RUSC2Q8N2Y8 1516 aa23.32■■□□□ 1.32
VRK3-219ENST00000600137 CHD1O14646 1710 aa23.31■■□□□ 1.32
VRK3-219ENST00000600137 OSCARQ8IYS5 282 aa23.3■■□□□ 1.32
VRK3-219ENST00000600137 SYNJ2O15056 1496 aa23.3■■□□□ 1.32
VRK3-219ENST00000600137 ADAMTS12P58397 1594 aa23.27■■□□□ 1.32
VRK3-219ENST00000600137 FBLN2P98095 1184 aa23.26■■□□□ 1.31
VRK3-219ENST00000600137 CHMP7Q8WUX9 453 aaPredicted RBP23.25■■□□□ 1.31
VRK3-219ENST00000600137 FHAD1B1AJZ9 1412 aa23.25■■□□□ 1.31
VRK3-219ENST00000600137 GRIN2AQ12879 1464 aa23.17■■□□□ 1.3
VRK3-219ENST00000600137 CARMIL1Q5VZK9 1371 aa23.14■■□□□ 1.3
VRK3-219ENST00000600137 CUL7Q14999 1698 aa23.13■■□□□ 1.29
VRK3-219ENST00000600137 NUP160Q12769 1436 aa23.1■■□□□ 1.29
VRK3-219ENST00000600137 CLASP1Q7Z460 1538 aa23.1■■□□□ 1.29
VRK3-219ENST00000600137 CEP170Q5SW79 1584 aa23.08■■□□□ 1.29
VRK3-219ENST00000600137 CSRNP3Q8WYN3 585 aa23.04■■□□□ 1.28
VRK3-219ENST00000600137 PRXQ9BXM0 1461 aa23.04■■□□□ 1.28
VRK3-219ENST00000600137 EEA1Q15075 1411 aa23.03■■□□□ 1.28
VRK3-219ENST00000600137 RAPGEF2Q9Y4G8 1499 aa23■■□□□ 1.27
VRK3-219ENST00000600137 FAM9AQ8IZU1 332 aaPredicted RBP22.97■■□□□ 1.27
VRK3-219ENST00000600137 ARHGEF11O15085 1522 aa22.92■■□□□ 1.26
VRK3-219ENST00000600137 KIAA0586Q9BVV6 1533 aa22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms