RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 NISCHQ9Y2I1 1504 aa39.56■■■■□ 3.92
SHKBP1-219ENST00000599575 CCDC180Q9P1Z9 1646 aa35.03■■■■□ 3.2
SHKBP1-219ENST00000599575 ABCC9O60706 1549 aa33.85■■■■□ 3.01
SHKBP1-219ENST00000599575 ZCCHC6Q5VYS8 1495 aaKnown RBP33.02■■■□□ 2.88
SHKBP1-219ENST00000599575 MYO15BQ96JP2 1530 aa32.92■■■□□ 2.86
SHKBP1-219ENST00000599575 NACADO15069 1562 aa32.91■■■□□ 2.86
SHKBP1-219ENST00000599575 DCAF1Q9Y4B6 1507 aa32.86■■■□□ 2.85
SHKBP1-219ENST00000599575 RB1CC1Q8TDY2 1594 aa32.83■■■□□ 2.85
SHKBP1-219ENST00000599575 DCAF8L2P0C7V8 631 aa32.83■■■□□ 2.85
SHKBP1-219ENST00000599575 UNC13AQ9UPW8 1703 aa31.87■■■□□ 2.69
SHKBP1-219ENST00000599575 SCRIBQ14160 1630 aa31.86■■■□□ 2.69
SHKBP1-219ENST00000599575 BICRAQ9NZM4 1560 aa31.73■■■□□ 2.67
SHKBP1-219ENST00000599575 PABPN1Q86U42 306 aaKnown RBP eCLIP31.68■■■□□ 2.66
SHKBP1-219ENST00000599575 SHROOM4Q9ULL8 1493 aa31.67■■■□□ 2.66
SHKBP1-219ENST00000599575 EIF4G1Q04637 1599 aaKnown RBP30.91■■■□□ 2.54
SHKBP1-219ENST00000599575 DNAJC5BQ9UF47 199 aa30.75■■■□□ 2.51
SHKBP1-219ENST00000599575 CECR2Q9BXF3 1484 aa30.69■■■□□ 2.5
SHKBP1-219ENST00000599575 BAZ1AQ9NRL2 1556 aaPredicted RBP30.67■■■□□ 2.5
SHKBP1-219ENST00000599575 CC2D2AQ9P2K1 1620 aa30.65■■■□□ 2.5
SHKBP1-219ENST00000599575 SMARCA4P51532 1647 aa30.58■■■□□ 2.49
SHKBP1-219ENST00000599575 MROH2BQ7Z745 1585 aa30.41■■■□□ 2.46
SHKBP1-219ENST00000599575 SMARCA2P51531 1590 aa30.41■■■□□ 2.46
SHKBP1-219ENST00000599575 NCAPD3P42695 1498 aa30.38■■■□□ 2.45
SHKBP1-219ENST00000599575 ATAD2BQ9ULI0 1458 aa30.38■■■□□ 2.45
SHKBP1-219ENST00000599575 PEG3Q9GZU2 1588 aa30.37■■■□□ 2.45
SHKBP1-219ENST00000599575 RSF1Q96T23 1441 aaPredicted RBP30.25■■■□□ 2.43
SHKBP1-219ENST00000599575 HMGXB3Q12766 1538 aa30.23■■■□□ 2.43
SHKBP1-219ENST00000599575 BAZ1BQ9UIG0 1483 aaKnown RBP30.14■■■□□ 2.42
SHKBP1-219ENST00000599575 WIZO95785 1651 aa30.04■■■□□ 2.4
SHKBP1-219ENST00000599575 TOP2AP11388 1531 aaKnown RBP29.87■■■□□ 2.37
SHKBP1-219ENST00000599575 SUPT5HO00267 1087 aaKnown RBP29.65■■■□□ 2.34
SHKBP1-219ENST00000599575 CADPSQ9ULU8 1353 aa29.5■■■□□ 2.31
SHKBP1-219ENST00000599575 CCDC88BA6NC98 1476 aa29.49■■■□□ 2.31
SHKBP1-219ENST00000599575 LAMC3Q9Y6N6 1575 aa29.49■■■□□ 2.31
SHKBP1-219ENST00000599575 CFTRP13569 1480 aa29.38■■■□□ 2.29
SHKBP1-219ENST00000599575 NESP48681 1621 aa29.36■■■□□ 2.29
SHKBP1-219ENST00000599575 PDS5BQ9NTI5 1447 aa29.33■■■□□ 2.29
SHKBP1-219ENST00000599575 ERCC6Q03468 1493 aa29.23■■■□□ 2.27
SHKBP1-219ENST00000599575 FANCD2Q9BXW9 1451 aa29.1■■■□□ 2.25
SHKBP1-219ENST00000599575 PRDM2Q13029 1718 aa29.05■■■□□ 2.24
SHKBP1-219ENST00000599575 CEP164Q9UPV0 1460 aa29.04■■■□□ 2.24
SHKBP1-219ENST00000599575 KIF21AQ7Z4S6 1674 aa28.99■■■□□ 2.23
SHKBP1-219ENST00000599575 MRC2Q9UBG0 1479 aa28.93■■■□□ 2.22
SHKBP1-219ENST00000599575 THOC2Q8NI27 1593 aaKnown RBP28.89■■■□□ 2.22
SHKBP1-219ENST00000599575 CUX2O14529 1486 aa28.88■■■□□ 2.21
SHKBP1-219ENST00000599575 WDR62O43379 1518 aa28.83■■■□□ 2.21
SHKBP1-219ENST00000599575 ABCC8Q09428 1581 aa28.82■■■□□ 2.2
SHKBP1-219ENST00000599575 URB2Q14146 1524 aaKnown RBP28.74■■■□□ 2.19
SHKBP1-219ENST00000599575 DNMBPQ6XZF7 1577 aa28.67■■■□□ 2.18
SHKBP1-219ENST00000599575 TOPBP1Q92547 1522 aa28.65■■■□□ 2.18
SHKBP1-219ENST00000599575 WRNQ14191 1432 aaPredicted RBP eCLIP28.54■■■□□ 2.16
SHKBP1-219ENST00000599575 CUX1P39880 1505 aa28.52■■■□□ 2.16
SHKBP1-219ENST00000599575 IFT140Q96RY7 1462 aa28.46■■■□□ 2.15
SHKBP1-219ENST00000599575 POLA1P09884 1462 aaPredicted RBP28.44■■■□□ 2.14
SHKBP1-219ENST00000599575 TOP2BQ02880 1626 aa28.42■■■□□ 2.14
SHKBP1-219ENST00000599575 FGD5Q6ZNL6 1462 aa28.4■■■□□ 2.14
SHKBP1-219ENST00000599575 BIVM-ERCC5R4GMW8 1640 aa28.38■■■□□ 2.13
SHKBP1-219ENST00000599575 SOGA1O94964 1423 aa28.36■■■□□ 2.13
SHKBP1-219ENST00000599575 SYNJ1O43426 1573 aa28.34■■■□□ 2.13
SHKBP1-219ENST00000599575 TARBP1Q13395 1621 aaKnown RBP28.29■■■□□ 2.12
SHKBP1-219ENST00000599575 RAD54L2Q9Y4B4 1467 aa28.24■■■□□ 2.11
SHKBP1-219ENST00000599575 WDR97A6NE52 1622 aa28.24■■■□□ 2.11
SHKBP1-219ENST00000599575 ABCA10Q8WWZ4 1543 aa28.21■■■□□ 2.11
SHKBP1-219ENST00000599575 ZNF608Q9ULD9 1512 aaPredicted RBP28.18■■■□□ 2.1
SHKBP1-219ENST00000599575 TDRD9Q8NDG6 1382 aaKnown RBP28.11■■■□□ 2.09
SHKBP1-219ENST00000599575 EIF4G3O43432 1585 aaKnown RBP28.09■■■□□ 2.09
SHKBP1-219ENST00000599575 TRIM41Q8WV44 630 aa28.09■■■□□ 2.09
SHKBP1-219ENST00000599575 AQRO60306 1485 aaKnown RBP eCLIP28.08■■■□□ 2.09
SHKBP1-219ENST00000599575 GAPVD1Q14C86 1478 aa28.03■■■□□ 2.08
SHKBP1-219ENST00000599575 GRIN2BQ13224 1484 aa28.02■■■□□ 2.08
SHKBP1-219ENST00000599575 ABCA5Q8WWZ7 1642 aa28■■■□□ 2.07
SHKBP1-219ENST00000599575 KIF27Q86VH2 1401 aa27.96■■■□□ 2.07
SHKBP1-219ENST00000599575 MAGI1Q96QZ7 1491 aaPredicted RBP27.92■■■□□ 2.06
SHKBP1-219ENST00000599575 CHIC1Q5VXU3 224 aa27.92■■■□□ 2.06
SHKBP1-219ENST00000599575 ERICH3Q5RHP9 1530 aa27.89■■■□□ 2.06
SHKBP1-219ENST00000599575 SNAPC4Q5SXM2 1469 aa27.84■■■□□ 2.05
SHKBP1-219ENST00000599575 PBRM1Q86U86 1689 aa27.83■■■□□ 2.05
SHKBP1-219ENST00000599575 SYNJ2O15056 1496 aa27.79■■■□□ 2.04
SHKBP1-219ENST00000599575 IGF1RP08069 1367 aa27.77■■■□□ 2.04
SHKBP1-219ENST00000599575 FHAD1B1AJZ9 1412 aa27.76■■■□□ 2.04
SHKBP1-219ENST00000599575 CHMP7Q8WUX9 453 aaPredicted RBP27.75■■■□□ 2.03
SHKBP1-219ENST00000599575 OSCARQ8IYS5 282 aa27.74■■■□□ 2.03
SHKBP1-219ENST00000599575 EEA1Q15075 1411 aa27.71■■■□□ 2.03
SHKBP1-219ENST00000599575 ADAMTS12P58397 1594 aa27.7■■■□□ 2.03
SHKBP1-219ENST00000599575 FBLN2P98095 1184 aa27.69■■■□□ 2.02
SHKBP1-219ENST00000599575 CUL7Q14999 1698 aa27.66■■■□□ 2.02
SHKBP1-219ENST00000599575 GRIN2AQ12879 1464 aa27.62■■■□□ 2.01
SHKBP1-219ENST00000599575 RUSC2Q8N2Y8 1516 aa27.62■■■□□ 2.01
SHKBP1-219ENST00000599575 CARMIL1Q5VZK9 1371 aa27.61■■■□□ 2.01
SHKBP1-219ENST00000599575 CHD1O14646 1710 aa27.6■■■□□ 2.01
SHKBP1-219ENST00000599575 DNAJC5Q9H3Z4 198 aa27.58■■■□□ 2.01
SHKBP1-219ENST00000599575 CSRNP3Q8WYN3 585 aa27.55■■■□□ 2
SHKBP1-219ENST00000599575 NUP160Q12769 1436 aa27.5■■□□□ 1.99
SHKBP1-219ENST00000599575 RAPGEF2Q9Y4G8 1499 aa27.49■■□□□ 1.99
SHKBP1-219ENST00000599575 PRXQ9BXM0 1461 aa27.48■■□□□ 1.99
SHKBP1-219ENST00000599575 CLASP1Q7Z460 1538 aa27.43■■□□□ 1.98
SHKBP1-219ENST00000599575 CEP170Q5SW79 1584 aa27.39■■□□□ 1.98
SHKBP1-219ENST00000599575 KIAA0586Q9BVV6 1533 aa27.36■■□□□ 1.97
SHKBP1-219ENST00000599575 FAM9AQ8IZU1 332 aaPredicted RBP27.35■■□□□ 1.97
SHKBP1-219ENST00000599575 KIF21BO75037 1637 aa27.27■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms