RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 NISCHQ9Y2I1 1504 aa37.79■■■■□ 3.64
SHKBP1-216ENST00000598201 CCDC180Q9P1Z9 1646 aa33.34■■■□□ 2.93
SHKBP1-216ENST00000598201 ABCC9O60706 1549 aa32.29■■■□□ 2.76
SHKBP1-216ENST00000598201 ZCCHC6Q5VYS8 1495 aaKnown RBP31.77■■■□□ 2.68
SHKBP1-216ENST00000598201 DCAF8L2P0C7V8 631 aa31.52■■■□□ 2.64
SHKBP1-216ENST00000598201 NACADO15069 1562 aa31.28■■■□□ 2.6
SHKBP1-216ENST00000598201 DCAF1Q9Y4B6 1507 aa31.26■■■□□ 2.59
SHKBP1-216ENST00000598201 SHROOM4Q9ULL8 1493 aa31.25■■■□□ 2.59
SHKBP1-216ENST00000598201 MYO15BQ96JP2 1530 aa31.22■■■□□ 2.59
SHKBP1-216ENST00000598201 RB1CC1Q8TDY2 1594 aa31.21■■■□□ 2.59
SHKBP1-216ENST00000598201 SCRIBQ14160 1630 aa30.52■■■□□ 2.48
SHKBP1-216ENST00000598201 UNC13AQ9UPW8 1703 aa30.49■■■□□ 2.47
SHKBP1-216ENST00000598201 PABPN1Q86U42 306 aaKnown RBP eCLIP30.29■■■□□ 2.44
SHKBP1-216ENST00000598201 BICRAQ9NZM4 1560 aa30.25■■■□□ 2.43
SHKBP1-216ENST00000598201 SUPT5HO00267 1087 aaKnown RBP30.23■■■□□ 2.43
SHKBP1-216ENST00000598201 RSF1Q96T23 1441 aaPredicted RBP29.47■■■□□ 2.31
SHKBP1-216ENST00000598201 EIF4G1Q04637 1599 aaKnown RBP29.42■■■□□ 2.3
SHKBP1-216ENST00000598201 CECR2Q9BXF3 1484 aa29.42■■■□□ 2.3
SHKBP1-216ENST00000598201 DNAJC5BQ9UF47 199 aa29.27■■■□□ 2.28
SHKBP1-216ENST00000598201 BAZ1AQ9NRL2 1556 aaPredicted RBP29.25■■■□□ 2.27
SHKBP1-216ENST00000598201 MROH2BQ7Z745 1585 aa29.24■■■□□ 2.27
SHKBP1-216ENST00000598201 SMARCA4P51532 1647 aa29.21■■■□□ 2.27
SHKBP1-216ENST00000598201 CC2D2AQ9P2K1 1620 aa29.2■■■□□ 2.26
SHKBP1-216ENST00000598201 CHIC1Q5VXU3 224 aa29.09■■■□□ 2.25
SHKBP1-216ENST00000598201 WIZO95785 1651 aa29.01■■■□□ 2.24
SHKBP1-216ENST00000598201 ATAD2BQ9ULI0 1458 aa28.96■■■□□ 2.23
SHKBP1-216ENST00000598201 SMARCA2P51531 1590 aa28.93■■■□□ 2.22
SHKBP1-216ENST00000598201 PEG3Q9GZU2 1588 aa28.91■■■□□ 2.22
SHKBP1-216ENST00000598201 NCAPD3P42695 1498 aa28.88■■■□□ 2.21
SHKBP1-216ENST00000598201 BAZ1BQ9UIG0 1483 aaKnown RBP28.76■■■□□ 2.19
SHKBP1-216ENST00000598201 HMGXB3Q12766 1538 aa28.74■■■□□ 2.19
SHKBP1-216ENST00000598201 TOP2AP11388 1531 aaKnown RBP28.64■■■□□ 2.17
SHKBP1-216ENST00000598201 CCDC88BA6NC98 1476 aa28.43■■■□□ 2.14
SHKBP1-216ENST00000598201 TRIM41Q8WV44 630 aa28.31■■■□□ 2.12
SHKBP1-216ENST00000598201 CADPSQ9ULU8 1353 aa28.08■■■□□ 2.09
SHKBP1-216ENST00000598201 LOC105371045A0A1W2PR82 267 aa28.08■■■□□ 2.09
SHKBP1-216ENST00000598201 NESP48681 1621 aa28.07■■■□□ 2.08
SHKBP1-216ENST00000598201 LAMC3Q9Y6N6 1575 aa28.03■■■□□ 2.08
SHKBP1-216ENST00000598201 CFTRP13569 1480 aa28■■■□□ 2.07
SHKBP1-216ENST00000598201 ABCC8Q09428 1581 aa27.99■■■□□ 2.07
SHKBP1-216ENST00000598201 FAM9AQ8IZU1 332 aaPredicted RBP27.91■■■□□ 2.06
SHKBP1-216ENST00000598201 PDS5BQ9NTI5 1447 aa27.86■■■□□ 2.05
SHKBP1-216ENST00000598201 ERCC6Q03468 1493 aa27.79■■■□□ 2.04
SHKBP1-216ENST00000598201 PRDM2Q13029 1718 aa27.75■■■□□ 2.03
SHKBP1-216ENST00000598201 FANCD2Q9BXW9 1451 aa27.75■■■□□ 2.03
SHKBP1-216ENST00000598201 KIF21AQ7Z4S6 1674 aa27.71■■■□□ 2.03
SHKBP1-216ENST00000598201 WRNQ14191 1432 aaPredicted RBP eCLIP27.7■■■□□ 2.02
SHKBP1-216ENST00000598201 CEP164Q9UPV0 1460 aa27.66■■■□□ 2.02
SHKBP1-216ENST00000598201 SYNJ1O43426 1573 aa27.6■■■□□ 2.01
SHKBP1-216ENST00000598201 EHMT2Q96KQ7 1210 aa27.6■■■□□ 2.01
SHKBP1-216ENST00000598201 SOGA1O94964 1423 aa27.57■■■□□ 2
SHKBP1-216ENST00000598201 MRC2Q9UBG0 1479 aa27.52■■■□□ 2
SHKBP1-216ENST00000598201 THOC2Q8NI27 1593 aaKnown RBP27.49■■□□□ 1.99
SHKBP1-216ENST00000598201 RUSC2Q8N2Y8 1516 aa27.47■■□□□ 1.99
SHKBP1-216ENST00000598201 URB2Q14146 1524 aaKnown RBP27.44■■□□□ 1.98
SHKBP1-216ENST00000598201 WDR62O43379 1518 aa27.4■■□□□ 1.98
SHKBP1-216ENST00000598201 EEA1Q15075 1411 aa27.4■■□□□ 1.98
SHKBP1-216ENST00000598201 TOP2BQ02880 1626 aa27.39■■□□□ 1.98
SHKBP1-216ENST00000598201 TOPBP1Q92547 1522 aa27.35■■□□□ 1.97
SHKBP1-216ENST00000598201 CSRNP3Q8WYN3 585 aa27.34■■□□□ 1.97
SHKBP1-216ENST00000598201 DNMBPQ6XZF7 1577 aa27.33■■□□□ 1.97
SHKBP1-216ENST00000598201 BIVM-ERCC5R4GMW8 1640 aa27.33■■□□□ 1.97
SHKBP1-216ENST00000598201 CUX1P39880 1505 aa27.3■■□□□ 1.96
SHKBP1-216ENST00000598201 CUX2O14529 1486 aa27.3■■□□□ 1.96
SHKBP1-216ENST00000598201 POLA1P09884 1462 aaPredicted RBP27.15■■□□□ 1.94
SHKBP1-216ENST00000598201 FGD5Q6ZNL6 1462 aa27.15■■□□□ 1.94
SHKBP1-216ENST00000598201 PCGF6Q9BYE7 350 aa27.14■■□□□ 1.94
SHKBP1-216ENST00000598201 TNIKQ9UKE5 1360 aa27.11■■□□□ 1.93
SHKBP1-216ENST00000598201 GOLGA3Q08378 1498 aa27.11■■□□□ 1.93
SHKBP1-216ENST00000598201 KIF21BO75037 1637 aa27.07■■□□□ 1.92
SHKBP1-216ENST00000598201 IFT140Q96RY7 1462 aa27.06■■□□□ 1.92
SHKBP1-216ENST00000598201 UBTFP17480 764 aaKnown RBP27.06■■□□□ 1.92
SHKBP1-216ENST00000598201 RAD54L2Q9Y4B4 1467 aa27.05■■□□□ 1.92
SHKBP1-216ENST00000598201 CEP162Q5TB80 1403 aa27.04■■□□□ 1.92
SHKBP1-216ENST00000598201 TARBP1Q13395 1621 aaKnown RBP27■■□□□ 1.91
SHKBP1-216ENST00000598201 RAPGEF2Q9Y4G8 1499 aa26.96■■□□□ 1.91
SHKBP1-216ENST00000598201 TRIM26Q12899 539 aaPredicted RBP26.94■■□□□ 1.9
SHKBP1-216ENST00000598201 KIF27Q86VH2 1401 aa26.93■■□□□ 1.9
SHKBP1-216ENST00000598201 ZNF608Q9ULD9 1512 aaPredicted RBP26.92■■□□□ 1.9
SHKBP1-216ENST00000598201 ABCA10Q8WWZ4 1543 aa26.9■■□□□ 1.9
SHKBP1-216ENST00000598201 TDRD9Q8NDG6 1382 aaKnown RBP26.88■■□□□ 1.89
SHKBP1-216ENST00000598201 PRXQ9BXM0 1461 aa26.88■■□□□ 1.89
SHKBP1-216ENST00000598201 AQRO60306 1485 aaKnown RBP eCLIP26.85■■□□□ 1.891e-9■■■■□ 22.4
SHKBP1-216ENST00000598201 WDR97A6NE52 1622 aa26.85■■□□□ 1.89
SHKBP1-216ENST00000598201 ERICH3Q5RHP9 1530 aa26.8■■□□□ 1.88
SHKBP1-216ENST00000598201 EIF4G3O43432 1585 aaKnown RBP26.8■■□□□ 1.88
SHKBP1-216ENST00000598201 PPARGC1BQ86YN6 1023 aaKnown RBP26.78■■□□□ 1.88
SHKBP1-216ENST00000598201 GAPVD1Q14C86 1478 aa26.75■■□□□ 1.87
SHKBP1-216ENST00000598201 CLIP1P30622 1438 aa26.73■■□□□ 1.87
SHKBP1-216ENST00000598201 ABCA5Q8WWZ7 1642 aa26.73■■□□□ 1.87
SHKBP1-216ENST00000598201 IGF1RP08069 1367 aa26.73■■□□□ 1.87
SHKBP1-216ENST00000598201 GRIN2BQ13224 1484 aa26.68■■□□□ 1.86
SHKBP1-216ENST00000598201 RANGAP1P46060 587 aaPredicted RBP26.63■■□□□ 1.85
SHKBP1-216ENST00000598201 PBRM1Q86U86 1689 aa26.62■■□□□ 1.85
SHKBP1-216ENST00000598201 HRCP23327 699 aa26.61■■□□□ 1.85
SHKBP1-216ENST00000598201 SNAPC4Q5SXM2 1469 aa26.58■■□□□ 1.85
SHKBP1-216ENST00000598201 CARMIL1Q5VZK9 1371 aa26.57■■□□□ 1.84
SHKBP1-216ENST00000598201 MAGI1Q96QZ7 1491 aaPredicted RBP26.55■■□□□ 1.84
SHKBP1-216ENST00000598201 VPS8Q8N3P4 1428 aa26.53■■□□□ 1.84
SHKBP1-216ENST00000598201 FBLN2P98095 1184 aa26.49■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms